Gm27040 Gene Detail

Summary

• Symbol
  Gm27040
• Name
  predicted gene, 27040

• Feature Type
  lncRNA gene
• IDs
  MGI:5504155
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:123570269-123582677 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504155	lncRNA gene	Chr7:123570269-123582677 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004503	antisense lncRNA gene	Chr7:128139725-128152393 (-)
A/J	MGP_AJ_G0004483	antisense lncRNA gene	Chr7:124790094-124802452 (-)
AKR/J	MGP_AKRJ_G0004466	antisense lncRNA gene	Chr7:127964986-127977290 (-)
BALB/cJ	MGP_BALBcJ_G0004468	antisense lncRNA gene	Chr7:124451541-124464759 (-)
C3H/HeJ	MGP_C3HHeJ_G0004417	antisense lncRNA gene	Chr7:127873640-127887097 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004618	antisense lncRNA gene	Chr7:133141240-133153549 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004073	antisense lncRNA gene	Chr7:126055678-126068699 (-)
CAST/EiJ	MGP_CASTEiJ_G0004377	antisense lncRNA gene	Chr7:119662342-119680597 (-)
CBA/J	MGP_CBAJ_G0004412	antisense lncRNA gene	Chr7:137618680-137634394 (-)
DBA/2J	MGP_DBA2J_G0004426	antisense lncRNA gene	Chr7:122779996-122792839 (-)
FVB/NJ	MGP_FVBNJ_G0004443	antisense lncRNA gene	Chr7:122621161-122633701 (-)
LP/J	MGP_LPJ_G0004507	antisense lncRNA gene	Chr7:129572263-129587094 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004432	antisense lncRNA gene	Chr7:138934296-138947798 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004617	antisense lncRNA gene	Chr7:126954212-126971475 (-)
PWK/PhJ	MGP_PWKPhJ_G0004330	antisense lncRNA gene	Chr7:115738265-115752507 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004271	antisense lncRNA gene	Chr7:113776947-113792147 (-)
WSB/EiJ	MGP_WSBEiJ_G0004416	antisense lncRNA gene	Chr7:127885713-127900111 (-)

Homology

• Gene Tree
  Gm27040
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098129 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098129	Ensembl Gene Model | MGI Sequence Detail	12409	C57BL/6J
transcript	ENSMUST00000181984	Ensembl | MGI Sequence Detail	504	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;