Gm27042 Gene Detail

Summary

• Symbol
  Gm27042
• Name
  predicted gene, 27042

• Feature Type
  lncRNA gene
• IDs
  MGI:5504157
  NCBI Gene: 102636239
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:40577879-40583306 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504157	lncRNA gene	Chr19:40576940-40583309 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005831	lincRNA gene	Chr19:39805518-39810944 (+)
A/J	MGP_AJ_G0005823	lincRNA gene	Chr19:37865120-37870546 (+)
AKR/J	MGP_AKRJ_G0005798	lincRNA gene	Chr19:39156654-39162082 (+)
BALB/cJ	MGP_BALBcJ_G0005802	lincRNA gene	Chr19:37955266-37961485 (+)
C3H/HeJ	MGP_C3HHeJ_G0005749	lincRNA gene	Chr19:39299444-39304893 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005962	lincRNA gene	Chr19:40886726-40893571 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005302	lincRNA gene	Chr19:37274753-37279792 (+)
CAST/EiJ	MGP_CASTEiJ_G0005687	lincRNA gene	Chr19:38929253-38934484 (+)
CBA/J	MGP_CBAJ_G0005734	lincRNA gene	Chr19:42877765-42883193 (+)
DBA/2J	MGP_DBA2J_G0005755	lincRNA gene	Chr19:37769777-37775250 (+)
FVB/NJ	MGP_FVBNJ_G0005781	lincRNA gene	Chr19:37521390-37526812 (+)
LP/J	MGP_LPJ_G0005835	lincRNA gene	Chr19:39843365-39848793 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005768	lincRNA gene	Chr19:42573664-42579092 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005959	lincRNA gene	Chr19:39187300-39192726 (+)
PWK/PhJ	MGP_PWKPhJ_G0005635	lincRNA gene	Chr19:37614097-37619467 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm27042
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000097792 (Evidence)
• NCBI Gene
  102636239

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097792	Ensembl Gene Model | MGI Sequence Detail	5428	C57BL/6J
transcript	ENSMUST00000181109	Ensembl | MGI Sequence Detail	1098	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14