Gm27048 Gene Detail

Summary

• Symbol
  Gm27048
• Name
  predicted gene, 27048

• Feature Type
  lncRNA gene
• IDs
  MGI:5504163
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:81660163-81665296 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504163	lncRNA gene	Chr8:81660163-81665296 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007341	lincRNA gene	Chr8:81669919-81675156 (-)
A/J	MGP_AJ_G0007338	lincRNA gene	Chr8:78434228-78439465 (-)
AKR/J	MGP_AKRJ_G0007310	lincRNA gene	Chr8:80781736-80786973 (-)
BALB/cJ	MGP_BALBcJ_G0007316	lincRNA gene	Chr8:78533556-78538793 (-)
C3H/HeJ	MGP_C3HHeJ_G0007260	lincRNA gene	Chr8:81410127-81415364 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007487	lincRNA gene	Chr8:84824089-84829222 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006682	lincRNA gene	Chr8:72425592-72431055 (-)
CAST/EiJ	MGP_CASTEiJ_G0007162	lincRNA gene	Chr8:80742313-80751106 (-)
CBA/J	MGP_CBAJ_G0007243	lincRNA gene	Chr8:87816341-87821578 (-)
DBA/2J	MGP_DBA2J_G0007265	lincRNA gene	Chr8:78107919-78113156 (-)
FVB/NJ	MGP_FVBNJ_G0007286	lincRNA gene	Chr8:77057784-77062917 (-)
LP/J	MGP_LPJ_G0007346	lincRNA gene	Chr8:81761687-81766924 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007262	lincRNA gene	Chr8:90303896-90310883 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007489	lincRNA gene	Chr8:80781535-80786772 (-)
PWK/PhJ	MGP_PWKPhJ_G0007104	lincRNA gene	Chr8:77368488-77373622 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0007222	lincRNA gene	Chr8:81131971-81137208 (-)

Homology

• Gene Tree
  Gm27048
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27048
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000098001 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098001	Ensembl Gene Model | MGI Sequence Detail	5134	C57BL/6J
transcript	ENSMUST00000182891	Ensembl | MGI Sequence Detail	4627	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;