Gm27160 Pseudogene Detail

Summary

• Symbol
  Gm27160
• Name
  predicted gene 27160

• Feature Type
  pseudogene
• IDs
  MGI:5521003
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:36393592-36393790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521003	pseudogene	Chr9:36393592-36393790 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014133	pseudogene	Chr9:34399908-34400106 (+)
A/J	MGP_AJ_G0014154	pseudogene	Chr9:33506090-33506288 (+)
AKR/J	MGP_AKRJ_G0014075	pseudogene	Chr9:34259473-34259671 (+)
BALB/cJ	MGP_BALBcJ_G0014102	pseudogene	Chr9:33372709-33372907 (+)
C3H/HeJ	MGP_C3HHeJ_G0013934	pseudogene	Chr9:34660326-34660524 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014546	pseudogene	Chr9:35502390-35502588 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013593	pseudogene	Chr9:34390842-34391040 (+)
CBA/J	MGP_CBAJ_G0013917	pseudogene	Chr9:36741490-36741688 (+)
DBA/2J	MGP_DBA2J_G0013998	pseudogene	Chr9:33566056-33566254 (+)
FVB/NJ	MGP_FVBNJ_G0013997	pseudogene	Chr9:32819196-32819394 (+)
LP/J	MGP_LPJ_G0014082	pseudogene	Chr9:34695327-34695525 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014029	pseudogene	Chr9:38398909-38399107 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014518	pseudogene	Chr9:34203999-34204197 (+)
PWK/PhJ	MGP_PWKPhJ_G0013407	pseudogene	Chr9:33498211-33498409 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013190	pseudogene	Chr9:34404800-34404998 (+)
WSB/EiJ	MGP_WSBEiJ_G0013650	pseudogene	Chr9:33997204-33997402 (+)

Homology

• Gene Tree
  Gm27160
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm27160
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000098949 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098949	Ensembl Gene Model | MGI Sequence Detail	199	C57BL/6J
transcript	ENSMUST00000184837	Ensembl | MGI Sequence Detail	199	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506

TSS for Gm27160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84365	Chr9:36393185-36393188 (+)	-405 bp