Gm27166 Gene Detail

Summary

• Symbol
  Gm27166
• Name
  predicted gene 27166

• Feature Type
  lncRNA gene
• IDs
  MGI:5521009
  NCBI Gene: 102634550
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:32943088-33002095 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  1889 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521009	lncRNA gene	Chr9:32943087-33002095 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007416	lincRNA gene	Chr9:30784958-30842884 (+)
A/J	MGP_AJ_G0007412	lincRNA gene	Chr9:29990879-30042276 (+)
AKR/J	MGP_AKRJ_G0007384	lincRNA gene	Chr9:30660802-30716649 (+)
BALB/cJ	MGP_BALBcJ_G0007390	lincRNA gene	Chr9:29898970-29950732 (+)
C3H/HeJ	MGP_C3HHeJ_G0007334	lincRNA gene	Chr9:30990314-31042959 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007561	lincRNA gene	Chr9:31838351-31894629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006752	lincRNA gene	Chr9:28770357-28826202 (+)
CAST/EiJ	MGP_CASTEiJ_G0007237	lincRNA gene	Chr9:30860746-30918844 (+)
CBA/J	MGP_CBAJ_G0007316	lincRNA gene	Chr9:32897190-32952293 (+)
DBA/2J	MGP_DBA2J_G0007339	lincRNA gene	Chr9:29987898-30041884 (+)
FVB/NJ	MGP_FVBNJ_G0007360	lincRNA gene	Chr9:29408606-29466573 (+)
LP/J	MGP_LPJ_G0007421	lincRNA gene	Chr9:31010741-31065557 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007337	lincRNA gene	Chr9:34475626-34550322 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007564	lincRNA gene	Chr9:30635919-30694327 (+)
PWK/PhJ	MGP_PWKPhJ_G0007178	lincRNA gene	Chr9:29961367-30015961 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007084	lincRNA gene	Chr9:30749294-30803645 (+)
WSB/EiJ	MGP_WSBEiJ_G0007297	lincRNA gene	Chr9:30375560-30428905 (+)

Homology

• Gene Tree
  Gm27166
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000098519 (Evidence)
• NCBI Gene
  102634550

Representative Sequences			Length	Strain/Species
genomic	102634550	NCBI Gene Model | MGI Sequence Detail	59008	C57BL/6J
transcript	AK081663	GenBank | ENA | DDBJ | MGI Sequence Detail	1930	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;