Gm27178 Pseudogene Detail

Summary

• Symbol
  Gm27178
• Name
  predicted gene 27178

• Feature Type
  pseudogene
• IDs
  MGI:5521021
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:85906961-85907300 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521021	pseudogene	Chr17:85906961-85907300 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011406	pseudogene	Chr17:88849879-88850218 (+)
A/J	MGP_AJ_G0011394	pseudogene	Chr17:86007892-86008231 (+)
AKR/J	MGP_AKRJ_G0011360	pseudogene	Chr17:87409747-87410086 (+)
BALB/cJ	MGP_BALBcJ_G0011373	pseudogene	Chr17:85851215-85851554 (+)
C3H/HeJ	MGP_C3HHeJ_G0011261	pseudogene	Chr17:88287861-88288200 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011667	pseudogene	Chr17:91975642-91975981 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010226	pseudogene	Chr17:81201383-81201728 (+)
CAST/EiJ	MGP_CASTEiJ_G0011071	pseudogene	Chr17:89093460-89093787 (+)
CBA/J	MGP_CBAJ_G0011239	pseudogene	Chr17:95783519-95783858 (+)
DBA/2J	MGP_DBA2J_G0011289	pseudogene	Chr17:84471582-84471921 (+)
FVB/NJ	MGP_FVBNJ_G0011296	pseudogene	Chr17:83963272-83963611 (+)
LP/J	MGP_LPJ_G0011366	pseudogene	Chr17:89609883-89610222 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011288	pseudogene	Chr17:95794042-95794381 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011652	pseudogene	Chr17:87921374-87921713 (+)
PWK/PhJ	MGP_PWKPhJ_G0010937	pseudogene	Chr17:84068448-84068787 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010758	pseudogene	Chr17:84723386-84723726 (+)
WSB/EiJ	MGP_WSBEiJ_G0011106	pseudogene	Chr17:88778435-88778774 (+)

Homology

• Gene Tree
  Gm27178
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098438 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098438	Ensembl Gene Model | MGI Sequence Detail	340	C57BL/6J
transcript	ENSMUST00000184962	Ensembl | MGI Sequence Detail	340	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;