Gm27187 Gene Detail

Summary

• Symbol
  Gm27187
• Name
  predicted gene 27187

• Feature Type
  lncRNA gene
• IDs
  MGI:5521030
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:35871983-35922854 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  1593 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521030	lncRNA gene	Chr9:35871983-35922854 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007422	lincRNA gene	Chr9:33805280-33814185 (-)
A/J	MGP_AJ_G0007418	lincRNA gene	Chr9:32941077-32949982 (-)
AKR/J	MGP_AKRJ_G0007391	lincRNA gene	Chr9:33646185-33655098 (-)
BALB/cJ	MGP_BALBcJ_G0007396	lincRNA gene	Chr9:32837350-32846255 (-)
C3H/HeJ	MGP_C3HHeJ_G0007340	lincRNA gene	Chr9:34012816-34080777 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007567	lincRNA gene	Chr9:34939324-34948273 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0007243	lincRNA gene	Chr9:33904891-33913918 (-)
CBA/J	MGP_CBAJ_G0007321	lincRNA gene	Chr9:36096087-36105163 (-)
DBA/2J	MGP_DBA2J_G0007345	lincRNA gene	Chr9:32968306-32977287 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0007427	lincRNA gene	Chr9:34041855-34098869 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007343	lincRNA gene	Chr9:37718113-37727498 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007569	lincRNA gene	Chr9:33637722-33648435 (-)
PWK/PhJ	MGP_PWKPhJ_G0007184	lincRNA gene	Chr9:32907410-32927065 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007089	lincRNA gene	Chr9:33927276-33936118 (-)
WSB/EiJ	MGP_WSBEiJ_G0007302	lincRNA gene	Chr9:33400939-33410018 (-)

Homology

• Gene Tree
  Gm27187
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm27187
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000099201 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099201	Ensembl Gene Model | MGI Sequence Detail	50872	C57BL/6J
transcript	ENSMUST00000184873	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506

TSS for Gm27187:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88775	Chr9:35880814-35880818 (-)	42,038 bp