Gm27197 Gene Detail

Summary

• Symbol
  Gm27197
• Name
  predicted gene 27197

• Feature Type
  lncRNA gene
• IDs
  MGI:5521040
  NCBI Gene: 102639358
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:38237369-38238328 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521040	lncRNA gene	Chr2:38236318-38240673 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003555	antisense lncRNA gene	Chr2:37093918-37094877 (-)
A/J	MGP_AJ_G0003535	antisense lncRNA gene	Chr2:35568519-35569478 (-)
AKR/J	MGP_AKRJ_G0003514	antisense lncRNA gene	Chr2:36747218-36748169 (-)
BALB/cJ	MGP_BALBcJ_G0003524	antisense lncRNA gene	Chr2:35623296-35624255 (-)
C3H/HeJ	MGP_C3HHeJ_G0003472	antisense lncRNA gene	Chr2:36661881-36662840 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003662	antisense lncRNA gene	Chr2:38128984-38129943 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003172	antisense lncRNA gene	Chr2:34224409-34225368 (-)
CAST/EiJ	MGP_CASTEiJ_G0003435	antisense lncRNA gene	Chr2:36605680-36606639 (-)
CBA/J	MGP_CBAJ_G0003469	antisense lncRNA gene	Chr2:39562760-39563719 (-)
DBA/2J	MGP_DBA2J_G0003477	antisense lncRNA gene	Chr2:35317182-35318141 (-)
FVB/NJ	MGP_FVBNJ_G0003496	antisense lncRNA gene	Chr2:35184021-35184980 (-)
LP/J	MGP_LPJ_G0003550	antisense lncRNA gene	Chr2:36977628-36978587 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003484	antisense lncRNA gene	Chr2:39178485-39179444 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003665	antisense lncRNA gene	Chr2:36636291-36637250 (-)
PWK/PhJ	MGP_PWKPhJ_G0003390	antisense lncRNA gene	Chr2:35217052-35218011 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003335	antisense lncRNA gene	Chr2:36747091-36748052 (-)
WSB/EiJ	MGP_WSBEiJ_G0003470	antisense lncRNA gene	Chr2:36802401-36803360 (-)

Homology

• Gene Tree
  Gm27197
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000098383 (Evidence)
• NCBI Gene
  102639358

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098383	Ensembl Gene Model | MGI Sequence Detail	960	C57BL/6J
transcript	ENSMUST00000184325	Ensembl | MGI Sequence Detail	479	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;