Gm27209 Gene Detail

Summary

• Symbol
  Gm27209
• Name
  predicted gene 27209

• Feature Type
  lncRNA gene
• IDs
  MGI:5521052
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:100493297-100495174 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521052	lncRNA gene	Chr15:100493297-100495174 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003315	antisense lncRNA gene	Chr15:102571657-102573491 (+)
A/J	MGP_AJ_G0003291	antisense lncRNA gene	Chr15:98533720-98535582 (+)
AKR/J	MGP_AKRJ_G0003274	antisense lncRNA gene	Chr15:101541731-101543871 (+)
BALB/cJ	MGP_BALBcJ_G0003280	antisense lncRNA gene	Chr15:98643645-98646343 (+)
C3H/HeJ	MGP_C3HHeJ_G0003233	antisense lncRNA gene	Chr15:101621784-101624488 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003422	antisense lncRNA gene	Chr15:106423407-106425275 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002943	antisense lncRNA gene	Chr15:94286576-94288206 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0003230	antisense lncRNA gene	Chr15:110052150-110058387 (+)
DBA/2J	MGP_DBA2J_G0003235	antisense lncRNA gene	Chr15:97884888-97887045 (+)
FVB/NJ	MGP_FVBNJ_G0003254	antisense lncRNA gene	Chr15:96904632-96906695 (+)
LP/J	MGP_LPJ_G0003308	antisense lncRNA gene	Chr15:102727424-102730151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003243	antisense lncRNA gene	Chr15:113794763-113796593 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003424	antisense lncRNA gene	Chr15:101545955-101548631 (+)
PWK/PhJ	MGP_PWKPhJ_G0003157	antisense lncRNA gene	Chr15:98013899-98016510 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003103	antisense lncRNA gene	Chr15:101435590-101437450 (+)
WSB/EiJ	MGP_WSBEiJ_G0003233	antisense lncRNA gene	Chr15:102167352-102169204 (+)

Homology

• Gene Tree
  Gm27209
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27209
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000098620 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098620	Ensembl Gene Model | MGI Sequence Detail	1878	C57BL/6J
transcript	ENSMUST00000183834	Ensembl | MGI Sequence Detail	898	Not Applicable

References

• Summaries
  All 19

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27