Gm27218 Pseudogene Detail

Summary

• Symbol
  Gm27218
• Name
  predicted gene 27218

• Feature Type
  pseudogene
• IDs
  MGI:5521061
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:36449228-36449619 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521061	pseudogene	Chr9:36449228-36449619 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014134	pseudogene	Chr9:34452633-34453024 (+)
A/J	MGP_AJ_G0014155	pseudogene	Chr9:33567282-33567673 (+)
AKR/J	MGP_AKRJ_G0014076	pseudogene	Chr9:34314067-34314458 (+)
BALB/cJ	MGP_BALBcJ_G0014103	pseudogene	Chr9:33426466-33426857 (+)
C3H/HeJ	MGP_C3HHeJ_G0013935	pseudogene	Chr9:34721143-34721534 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014547	pseudogene	Chr9:35565446-35565837 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013594	pseudogene	Chr9:34444980-34445371 (+)
CBA/J	MGP_CBAJ_G0013918	pseudogene	Chr9:36802579-36802969 (+)
DBA/2J	MGP_DBA2J_G0013999	pseudogene	Chr9:33617753-33618144 (+)
FVB/NJ	MGP_FVBNJ_G0013998	pseudogene	Chr9:32875293-32875684 (+)
LP/J	MGP_LPJ_G0014083	pseudogene	Chr9:34747425-34747816 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014030	pseudogene	Chr9:38468738-38469129 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014519	pseudogene	Chr9:34271569-34271960 (+)
PWK/PhJ	MGP_PWKPhJ_G0013408	pseudogene	Chr9:33547223-33547614 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013191	pseudogene	Chr9:34467717-34468102 (+)
WSB/EiJ	MGP_WSBEiJ_G0013651	pseudogene	Chr9:34052495-34052886 (+)

Homology

• Gene Tree
  Gm27218
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm27218
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000099274 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099274	Ensembl Gene Model | MGI Sequence Detail	392	C57BL/6J
transcript	ENSMUST00000183745	Ensembl | MGI Sequence Detail	392	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506