Gm27225 Pseudogene Detail

Summary

• Symbol
  Gm27225
• Name
  predicted gene 27225

• Feature Type
  pseudogene
• IDs
  MGI:5521068
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:80808087-80809266 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521068	pseudogene	Chr9:80808087-80809266 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014185	pseudogene	Chr9:81522579-81525442 (-)
A/J	MGP_AJ_G0014203	pseudogene	Chr9:78701143-78703038 (-)
AKR/J	MGP_AKRJ_G0014128	pseudogene	Chr9:80551620-80553581 (-)
BALB/cJ	MGP_BALBcJ_G0014153	pseudogene	Chr9:78326162-78327562 (-)
C3H/HeJ	MGP_C3HHeJ_G0013984	pseudogene	Chr9:81064126-81065837 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014597	pseudogene	Chr9:83705897-83706890 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012428	pseudogene	Chr9:77809512-77810686 (-)
CAST/EiJ	MGP_CASTEiJ_G0013641	pseudogene	Chr9:81436549-81437621 (-)
CBA/J	MGP_CBAJ_G0013966	pseudogene	Chr9:86707183-86710862 (-)
DBA/2J	MGP_DBA2J_G0014050	pseudogene	Chr9:78311643-78312639 (-)
FVB/NJ	MGP_FVBNJ_G0014049	pseudogene	Chr9:77495981-77497321 (-)
LP/J	MGP_LPJ_G0014133	pseudogene	Chr9:81745201-81747203 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014080	pseudogene	Chr9:87903436-87904896 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014570	pseudogene	Chr9:80783071-80785205 (-)
PWK/PhJ	MGP_PWKPhJ_G0013456	pseudogene	Chr9:78510629-78511794 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013241	pseudogene	Chr9:80912279-80913420 (-)
WSB/EiJ	MGP_WSBEiJ_G0013699	pseudogene	Chr9:80709610-80711702 (-)

Homology

• Gene Tree
  Gm27225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27225
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098935 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098935	Ensembl Gene Model | MGI Sequence Detail	1180	C57BL/6J
transcript	ENSMUST00000183833	Ensembl | MGI Sequence Detail	557	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;