Gm27227 Gene Detail

Summary

• Symbol
  Gm27227
• Name
  predicted gene 27227

• Feature Type
  lncRNA gene
• IDs
  MGI:5521070
  NCBI Gene: 102638853
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:80170588-80172732 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521070	lncRNA gene	Chr9:80169599-80172732 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004653	antisense lncRNA gene	Chr9:80848589-80850742 (-)
A/J	MGP_AJ_G0004634	antisense lncRNA gene	Chr9:78059237-78061363 (-)
AKR/J	MGP_AKRJ_G0004617	antisense lncRNA gene	Chr9:79900004-79902130 (-)
BALB/cJ	MGP_BALBcJ_G0004618	antisense lncRNA gene	Chr9:77690170-77692296 (-)
C3H/HeJ	MGP_C3HHeJ_G0004567	antisense lncRNA gene	Chr9:80417427-80419553 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004768	antisense lncRNA gene	Chr9:83022756-83024900 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004218	antisense lncRNA gene	Chr9:77193332-77195406 (-)
CAST/EiJ	MGP_CASTEiJ_G0004523	antisense lncRNA gene	Chr9:80763567-80765742 (-)
CBA/J	MGP_CBAJ_G0004561	antisense lncRNA gene	Chr9:85990183-85992309 (-)
DBA/2J	MGP_DBA2J_G0004576	antisense lncRNA gene	Chr9:77671233-77673359 (-)
FVB/NJ	MGP_FVBNJ_G0004594	antisense lncRNA gene	Chr9:76884076-76886202 (-)
LP/J	MGP_LPJ_G0004657	antisense lncRNA gene	Chr9:81087313-81089466 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004582	antisense lncRNA gene	Chr9:87210476-87212602 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004767	antisense lncRNA gene	Chr9:80121054-80123180 (-)
PWK/PhJ	MGP_PWKPhJ_G0004477	antisense lncRNA gene	Chr9:77872323-77874506 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004417	antisense lncRNA gene	Chr9:80253116-80255200 (-)
WSB/EiJ	MGP_WSBEiJ_G0004566	antisense lncRNA gene	Chr9:80042445-80044589 (-)

Homology

• Gene Tree
  Gm27227
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27227
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099016 (Evidence)
• NCBI Gene
  102638853

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099016	Ensembl Gene Model | MGI Sequence Detail	2145	C57BL/6J
transcript	ENSMUST00000183413	Ensembl | MGI Sequence Detail	633	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm27227:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90715	Chr9:80172703-80172715 (-)	23 bp
Tssr90714	Chr9:80172689-80172698 (-)	38 bp