Gm27252 Gene Detail

Summary

• Symbol
  Gm27252
• Name
  predicted gene 27252

• Feature Type
  lncRNA gene
• IDs
  MGI:5521095
  NCBI Gene: 102634962
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:63546204-63549973 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  226 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521095	lncRNA gene	Chr7:63546132-63550285 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015673	unclassified non-coding RNA gene	Chr7:65011491-65014652 (+)
A/J	MGP_AJ_G0015652	unclassified non-coding RNA gene	Chr7:63769372-63772533 (+)
AKR/J	MGP_AKRJ_G0015615	unclassified non-coding RNA gene	Chr7:65116488-65119652 (+)
BALB/cJ	MGP_BALBcJ_G0015613	unclassified non-coding RNA gene	Chr7:63508110-63511276 (+)
C3H/HeJ	MGP_C3HHeJ_G0015435	unclassified non-coding RNA gene	Chr7:65752017-65756613 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016067	unclassified non-coding RNA gene	Chr7:67792098-67795263 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013797	unclassified non-coding RNA gene	Chr7:66729424-66732610 (+)
CAST/EiJ	MGP_CASTEiJ_G0014990	unclassified non-coding RNA gene	Chr7:56424997-56430560 (+)
CBA/J	MGP_CBAJ_G0015416	unclassified non-coding RNA gene	Chr7:69988567-69991732 (+)
DBA/2J	MGP_DBA2J_G0015511	unclassified non-coding RNA gene	Chr7:62499873-62503478 (+)
FVB/NJ	MGP_FVBNJ_G0015518	unclassified non-coding RNA gene	Chr7:62607209-62610370 (+)
LP/J	MGP_LPJ_G0015591	unclassified non-coding RNA gene	Chr7:66240511-66245477 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015540	unclassified non-coding RNA gene	Chr7:70289494-70292658 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016109	unclassified non-coding RNA gene	Chr7:64376416-64379580 (+)
PWK/PhJ	MGP_PWKPhJ_G0014772	unclassified non-coding RNA gene	Chr7:55513145-55516335 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014561	unclassified non-coding RNA gene	Chr7:51519895-51523273 (+)
WSB/EiJ	MGP_WSBEiJ_G0015095	unclassified non-coding RNA gene	Chr7:64761945-64765142 (+)

Homology

• Gene Tree
  Gm27252
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  6 involving Gm27252
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000098708 (Evidence)
• NCBI Gene
  102634962

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098708	Ensembl Gene Model | MGI Sequence Detail	3770	C57BL/6J
transcript	ENSMUST00000246492	Ensembl | MGI Sequence Detail	1561	Not Applicable

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 16
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:348102 Unda BK, et al., Impaired OTUD7A-dependent Ankyrin regulation mediates neuronal dysfunction in mouse and human models of the 15q13.3 microdeletion syndrome. Mol Psychiatry. 2023 Apr;28(4):1747-1769

TSS for Gm27252:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66984	Chr7:63546127-63546140 (+)	-70 bp
Tssr66985	Chr7:63546225-63546247 (+)	32 bp
Tssr2285	Chr7:63546250-63546262 (+)	52 bp
Tssr66986	Chr7:63547144-63547173 (+)	955 bp