Gm27254 Pseudogene Detail

Summary

• Symbol
  Gm27254
• Name
  predicted gene 27254

• Feature Type
  pseudogene
• IDs
  MGI:5521097
  NCBI Gene: 102635850
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:72338409-72338925 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521097	pseudogene	Chr9:72338409-72338925 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0014105	pseudogene	Chr9:71734221-71734754 (-)
BALB/cJ	MGP_BALBcJ_G0014130	pseudogene	Chr9:69772789-69773204 (-)
C3H/HeJ	MGP_C3HHeJ_G0013961	pseudogene	Chr9:72236868-72238040 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0014027	pseudogene	Chr9:69783257-69784270 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014055	pseudogene	Chr9:78167327-78168295 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm27254
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27254
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8

• Ensembl
  ENSMUSG00000099019 (Evidence)
• NCBI Gene
  102635850

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099019	Ensembl Gene Model | MGI Sequence Detail	517	C57BL/6J
transcript	ENSMUST00000183926	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;