Gm27393 Gene Detail

Summary

• Symbol
  Gm27393
• Name
  predicted gene, 27393

• Feature Type
  snRNA gene
• IDs
  MGI:5530775
  NCBI Gene: 115487875
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:7836444-7836505 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530775	snRNA gene	Chr11:7836444-7836505 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037288	snRNA gene	Chr11:5109485-5109546 (-)
A/J	MGP_AJ_G0037275	snRNA gene	Chr11:4880802-4880863 (-)
AKR/J	MGP_AKRJ_G0037220	snRNA gene	Chr11:5056500-5056561 (-)
BALB/cJ	MGP_BALBcJ_G0037265	snRNA gene	Chr11:4868864-4868925 (-)
C3H/HeJ	MGP_C3HHeJ_G0036948	snRNA gene	Chr11:4977277-4977338 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037779	snRNA gene	Chr11:5227726-5227787 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034796	snRNA gene	Chr11:4677843-4677904 (-)
CAST/EiJ	MGP_CASTEiJ_G0036127	snRNA gene	Chr11:4967492-4967565 (-)
CBA/J	MGP_CBAJ_G0036922	snRNA gene	Chr11:5715180-5715241 (-)
DBA/2J	MGP_DBA2J_G0037098	snRNA gene	Chr11:4807729-4807790 (-)
FVB/NJ	MGP_FVBNJ_G0037046	snRNA gene	Chr11:4816227-4816288 (-)
LP/J	MGP_LPJ_G0037147	snRNA gene	Chr11:5160452-5160513 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037058	snRNA gene	Chr11:5296589-5296650 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037897	snRNA gene	Chr11:5173437-5173498 (-)
PWK/PhJ	MGP_PWKPhJ_G0035826	snRNA gene	Chr11:4809651-4809712 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036337	snRNA gene	Chr11:4934476-4934537 (-)

Homology

• Gene Tree
  Gm27393
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098853 (Evidence)
• NCBI Gene
  115487875

Representative Sequences			Length	Strain/Species
genomic	115487875	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
transcript	XR_004937321	RefSeq | MGI Sequence Detail	62	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;