Gm27396 Gene Detail

Summary

• Symbol
  Gm27396
• Name
  predicted gene, 27396

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5530778
  NCBI Gene: 115487633
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:3854099-3854156 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530778	snRNA gene	Chr1:3854099-3854156 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037124	snRNA gene	Chr1:789648-789705 (-)
A/J	MGP_AJ_G0037108	snRNA gene	Chr1:877093-877150 (-)
AKR/J	MGP_AKRJ_G0037057	snRNA gene	Chr1:797006-797063 (-)
BALB/cJ	MGP_BALBcJ_G0037100	snRNA gene	Chr1:825255-825312 (-)
C3H/HeJ	MGP_C3HHeJ_G0036787	snRNA gene	Chr1:839080-839137 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037613	snRNA gene	Chr1:858433-858490 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034656	snRNA gene	Chr1:673971-674027 (-)
CAST/EiJ	MGP_CASTEiJ_G0035976	snRNA gene	Chr1:1001881-1001938 (-)
CBA/J	MGP_CBAJ_G0036762	snRNA gene	Chr1:913338-913395 (-)
DBA/2J	MGP_DBA2J_G0036937	snRNA gene	Chr1:820607-820664 (-)
FVB/NJ	MGP_FVBNJ_G0036885	snRNA gene	Chr1:791558-791615 (-)
LP/J	MGP_LPJ_G0036984	snRNA gene	Chr1:974330-974387 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036896	snRNA gene	Chr1:995004-995061 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037732	snRNA gene	Chr1:815074-815131 (-)
PWK/PhJ	MGP_PWKPhJ_G0035671	snRNA gene	Chr1:759456-759513 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035476	snRNA gene	Chr1:972231-972288 (-)
WSB/EiJ	MGP_WSBEiJ_G0036178	snRNA gene	Chr1:832839-832896 (-)

Homology

• Gene Tree
  Gm27396
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000088333 (Evidence)
• NCBI Gene
  115487633

Representative Sequences			Length	Strain/Species
genomic	115487633	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;