Mir6401 Gene Detail

Summary

• Symbol
  Mir6401
• Name
  microRNA 6401
• Synonyms
  mmu-mir-6401

• Feature Type
  miRNA gene
• IDs
  MGI:5530824
  NCBI Gene: 102465215
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:139358934-139359042 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530824	miRNA gene	Chr7:139358934-139359042 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009066	miRNA gene	Chr7:144851258-144851364 (+)
A/J	MGP_AJ_G0009049	miRNA gene	Chr7:140735243-140735349 (+)
AKR/J	MGP_AKRJ_G0009039	miRNA gene	Chr7:144557932-144558040 (+)
BALB/cJ	MGP_BALBcJ_G0009035	miRNA gene	Chr7:140472620-140472726 (+)
C3H/HeJ	MGP_C3HHeJ_G0008973	miRNA gene	Chr7:144362023-144362129 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009274	miRNA gene	Chr7:150185950-150186058 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008152	miRNA gene	Chr7:141859399-141859507 (+)
CAST/EiJ	MGP_CASTEiJ_G0008808	miRNA gene	Chr7:136659185-136659293 (+)
CBA/J	MGP_CBAJ_G0008944	miRNA gene	Chr7:155252197-155252305 (+)
DBA/2J	MGP_DBA2J_G0008973	miRNA gene	Chr7:138688972-138689080 (+)
FVB/NJ	MGP_FVBNJ_G0008992	miRNA gene	Chr7:138571601-138571707 (+)
LP/J	MGP_LPJ_G0009068	miRNA gene	Chr7:146386714-146386820 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008957	miRNA gene	Chr7:155920335-155920441 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009243	miRNA gene	Chr7:143560570-143560678 (+)
PWK/PhJ	MGP_PWKPhJ_G0008738	miRNA gene	Chr7:131874832-131874940 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008579	miRNA gene	Chr7:130375952-130376060 (+)
WSB/EiJ	MGP_WSBEiJ_G0008904	miRNA gene	Chr7:144460048-144460156 (+)

Homology

• Gene Tree
  Mir6401
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Mir6401
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098619 (Evidence)
• NCBI Gene
  102465215

Representative Sequences			Length	Strain/Species
genomic	102465215	NCBI Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	NR_105827	RefSeq | MGI Sequence Detail	109	ZRU/MplStud

Other Database
Links

miRBase

MI0021937

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4