Mir7040 Gene Detail

Summary

• Symbol
  Mir7040
• Name
  microRNA 7040
• Synonyms
  mmu-mir-7040

• Feature Type
  miRNA gene
• IDs
  MGI:5530871
  NCBI Gene: 102465630
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83026692-83026754 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530871	miRNA gene	Chr6:83026692-83026754 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008913	miRNA gene	Chr6:84053395-84053457 (+)
A/J	MGP_AJ_G0008899	miRNA gene	Chr6:80840060-80840122 (+)
AKR/J	MGP_AKRJ_G0008887	miRNA gene	Chr6:83169518-83169580 (+)
BALB/cJ	MGP_BALBcJ_G0008887	miRNA gene	Chr6:80853018-80853080 (+)
C3H/HeJ	MGP_C3HHeJ_G0008845	miRNA gene	Chr6:101214065-101214127 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0009117	miRNA gene	Chr6:86332762-86332824 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008032	miRNA gene	Chr6:79198803-79198865 (+)
CAST/EiJ	MGP_CASTEiJ_G0008666	miRNA gene	Chr6:83168067-83168129 (+)
CBA/J	MGP_CBAJ_G0008793	miRNA gene	Chr6:89745034-89745096 (+)
DBA/2J	MGP_DBA2J_G0008825	miRNA gene	Chr6:80159669-80159731 (+)
FVB/NJ	MGP_FVBNJ_G0008842	miRNA gene	Chr6:79367386-79367448 (+)
LP/J	MGP_LPJ_G0008917	miRNA gene	Chr6:84047293-84047355 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008805	miRNA gene	Chr6:94049793-94049855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009093	miRNA gene	Chr6:82982258-82982320 (+)
PWK/PhJ	MGP_PWKPhJ_G0008594	miRNA gene	Chr6:79051859-79051921 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008439	miRNA gene	Chr6:81826031-81826093 (+)
WSB/EiJ	MGP_WSBEiJ_G0008762	miRNA gene	Chr6:83421837-83421899 (+)

Homology

• Gene Tree
  Mir7040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  2 involving Mir7040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099035 (Evidence)
• NCBI Gene
  102465630

Representative Sequences			Length	Strain/Species
genomic	102465630	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
transcript	NR_106007	RefSeq | MGI Sequence Detail	63	ZRU/MplStud

Other Database
Links

miRBase

MI0022889

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Mir7040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57277	Chr6:83025504-83025509 (+)	-1,185 bp