Gm27549 Gene Detail

Summary

• Symbol
  Gm27549
• Name
  predicted gene, 27549

• Feature Type
  snRNA gene
• IDs
  MGI:5530931
  NCBI Gene: 115490463
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41579178-41579239 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530931	snRNA gene	Chr6:41579178-41579239 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038061	snRNA gene	Chr6:40115875-40115936 (-)
A/J	MGP_AJ_G0038051	snRNA gene	Chr6:38371298-38371359 (-)
AKR/J	MGP_AKRJ_G0037989	snRNA gene	Chr6:39614990-39615051 (-)
BALB/cJ	MGP_BALBcJ_G0038035	snRNA gene	Chr6:38576385-38576446 (-)
C3H/HeJ	MGP_C3HHeJ_G0037707	snRNA gene	Chr6:39636334-39636395 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038565	snRNA gene	Chr6:41129434-41129495 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035418	snRNA gene	Chr6:36144488-36144549 (-)
CAST/EiJ	MGP_CASTEiJ_G0036861	snRNA gene	Chr6:39443435-39443496 (-)
CBA/J	MGP_CBAJ_G0037681	snRNA gene	Chr6:42837069-42837130 (-)
DBA/2J	MGP_DBA2J_G0037865	snRNA gene	Chr6:38199893-38199954 (-)
FVB/NJ	MGP_FVBNJ_G0037813	snRNA gene	Chr6:37921897-37921961 (-)
LP/J	MGP_LPJ_G0037908	snRNA gene	Chr6:40119972-40120033 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037819	snRNA gene	Chr6:45068289-45068350 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038680	snRNA gene	Chr6:39583334-39583395 (-)
PWK/PhJ	MGP_PWKPhJ_G0036551	snRNA gene	Chr6:37818471-37818532 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0037076	snRNA gene	Chr6:39497202-39497263 (-)

Homology

• Gene Tree
  Gm27549
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098970 (Evidence)
• NCBI Gene
  115490463

Representative Sequences			Length	Strain/Species
genomic	115490463	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
transcript	XR_004933878	RefSeq | MGI Sequence Detail	62	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;