Mir6335 Gene Detail

Summary

• Symbol
  Mir6335
• Name
  microRNA 6335
• Synonyms
  mmu-mir-6335

• Feature Type
  miRNA gene
• IDs
  MGI:5531218
  NCBI Gene: 102466627
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:67611387-67611484 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531218	miRNA gene	Chr2:67611387-67611484 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008551	miRNA gene	Chr2:67664667-67664764 (+)
A/J	MGP_AJ_G0008539	miRNA gene	Chr2:65053349-65053446 (+)
AKR/J	MGP_AKRJ_G0008524	miRNA gene	Chr2:66811622-66811719 (+)
BALB/cJ	MGP_BALBcJ_G0008527	miRNA gene	Chr2:65247468-65247565 (+)
C3H/HeJ	MGP_C3HHeJ_G0008467	miRNA gene	Chr2:67027814-67027911 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008735	miRNA gene	Chr2:69693897-69693994 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007721	miRNA gene	Chr2:62341580-62341677 (+)
CAST/EiJ	MGP_CASTEiJ_G0008325	miRNA gene	Chr2:67121694-67121791 (+)
CBA/J	MGP_CBAJ_G0008432	miRNA gene	Chr2:72253910-72254007 (+)
DBA/2J	MGP_DBA2J_G0008470	miRNA gene	Chr2:64714984-64715081 (+)
FVB/NJ	MGP_FVBNJ_G0008487	miRNA gene	Chr2:64090375-64090472 (+)
LP/J	MGP_LPJ_G0008558	miRNA gene	Chr2:67521301-67521398 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008449	miRNA gene	Chr2:74339010-74339107 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008723	miRNA gene	Chr2:66887184-66887281 (+)
PWK/PhJ	MGP_PWKPhJ_G0008252	miRNA gene	Chr2:64528038-64528135 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0008412	miRNA gene	Chr2:67305932-67306029 (+)

Homology

• Gene Tree
  Mir6335
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6335
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098734 (Evidence)
• NCBI Gene
  102466627

Representative Sequences			Length	Strain/Species
genomic	102466627	NCBI Gene Model | MGI Sequence Detail	98	C57BL/6J
transcript	NR_105752	RefSeq | MGI Sequence Detail	98	ZRU/MplStud

Other Database
Links

miRBase

MI0021862

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4