Mir6956 Gene Detail

Summary

• Symbol
  Mir6956
• Name
  microRNA 6956
• Synonyms
  mmu-mir-6956

• Feature Type
  miRNA gene
• IDs
  MGI:5531262
  NCBI Gene: 102465577
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:78886423-78886484 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531262	miRNA gene	Chr15:78886423-78886484 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008191	miRNA gene	Chr15:79245493-79245554 (+)
A/J	MGP_AJ_G0008181	miRNA gene	Chr15:76515041-76515102 (+)
AKR/J	MGP_AKRJ_G0008162	miRNA gene	Chr15:78633739-78633800 (+)
BALB/cJ	MGP_BALBcJ_G0008164	miRNA gene	Chr15:76487803-76487864 (+)
C3H/HeJ	MGP_C3HHeJ_G0008106	miRNA gene	Chr15:78638163-78638224 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008357	miRNA gene	Chr15:82361529-82361590 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007436	miRNA gene	Chr15:73000648-73000709 (+)
CAST/EiJ	MGP_CASTEiJ_G0007983	miRNA gene	Chr15:79326666-79326727 (+)
CBA/J	MGP_CBAJ_G0008075	miRNA gene	Chr15:84911158-84911219 (+)
DBA/2J	MGP_DBA2J_G0008110	miRNA gene	Chr15:75995849-75995910 (+)
FVB/NJ	MGP_FVBNJ_G0008135	miRNA gene	Chr15:75014196-75014257 (+)
LP/J	MGP_LPJ_G0008190	miRNA gene	Chr15:79441432-79441493 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008100	miRNA gene	Chr15:90070392-90070453 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008351	miRNA gene	Chr15:78658615-78658676 (+)
PWK/PhJ	MGP_PWKPhJ_G0007905	miRNA gene	Chr15:75998833-75998894 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007795	miRNA gene	Chr15:78442620-78442681 (+)
WSB/EiJ	MGP_WSBEiJ_G0008060	miRNA gene	Chr15:79029287-79029348 (+)

Homology

• Gene Tree
  Mir6956
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Mir6956
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099180 (Evidence)
• NCBI Gene
  102465577

Representative Sequences			Length	Strain/Species
genomic	102465577	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
transcript	NR_105921	RefSeq | MGI Sequence Detail	62	ZRU/MplStud

Other Database
Links

miRBase

MI0022803

References

• Summaries
  All 24

  Diseases 1

  Phenotypes 20
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Mir6956:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132034	Chr15:78886452-78886463 (+)	35 bp