Gm28054 Gene Detail

Summary

• Symbol
  Gm28054
• Name
  predicted gene 28054

• Feature Type
  lncRNA gene
• IDs
  MGI:5578760
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:92777885-92797844 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578760	lncRNA gene	Chr9:92777885-92797844 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007482	lincRNA gene	Chr9:93954391-93974285 (+)
A/J	MGP_AJ_G0007477	lincRNA gene	Chr9:90696231-90716904 (+)
AKR/J	MGP_AKRJ_G0007449	lincRNA gene	Chr9:92831443-92851170 (+)
BALB/cJ	MGP_BALBcJ_G0007454	lincRNA gene	Chr9:90348721-90368550 (+)
C3H/HeJ	MGP_C3HHeJ_G0007399	lincRNA gene	Chr9:93285745-93305490 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007626	lincRNA gene	Chr9:96595864-96617894 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006808	lincRNA gene	Chr9:88710780-88737631 (+)
CAST/EiJ	MGP_CASTEiJ_G0007302	lincRNA gene	Chr9:93029099-93053330 (+)
CBA/J	MGP_CBAJ_G0007380	lincRNA gene	Chr9:99931416-99953345 (+)
DBA/2J	MGP_DBA2J_G0007406	lincRNA gene	Chr9:90206911-90227257 (+)
FVB/NJ	MGP_FVBNJ_G0007422	lincRNA gene	Chr9:89158160-89177804 (+)
LP/J	MGP_LPJ_G0007486	lincRNA gene	Chr9:94172660-94192371 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007403	lincRNA gene	Chr9:101895376-101915343 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007631	lincRNA gene	Chr9:93063882-93083975 (+)
PWK/PhJ	MGP_PWKPhJ_G0007243	lincRNA gene	Chr9:90366392-90387434 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007147	lincRNA gene	Chr9:93124044-93142319 (+)
WSB/EiJ	MGP_WSBEiJ_G0007362	lincRNA gene	Chr9:92962651-92985081 (+)

Homology

• Gene Tree
  Gm28054
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28054
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099823 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099823	Ensembl Gene Model | MGI Sequence Detail	19960	C57BL/6J
transcript	ENSMUST00000187280	Ensembl | MGI Sequence Detail	872	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;