Gm28064 Pseudogene Detail

Summary

• Symbol
  Gm28064
• Name
  predicted gene 28064

• Feature Type
  pseudogene
• IDs
  MGI:5578770
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:21015935-21017138 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578770	pseudogene	Chr1:21015935-21017138 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010025	pseudogene	Chr1:18574352-18575550 (+)
A/J	MGP_AJ_G0010006	pseudogene	Chr1:18354452-18355652 (+)
AKR/J	MGP_AKRJ_G0009989	pseudogene	Chr1:18393544-18394744 (+)
BALB/cJ	MGP_BALBcJ_G0009995	pseudogene	Chr1:18047195-18048395 (+)
C3H/HeJ	MGP_C3HHeJ_G0009926	pseudogene	Chr1:18417212-18418412 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010245	pseudogene	Chr1:19443160-19444363 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009019	pseudogene	Chr1:16491664-16492885 (+)
CAST/EiJ	MGP_CASTEiJ_G0009774	pseudogene	Chr1:18514100-18515302 (+)
CBA/J	MGP_CBAJ_G0009899	pseudogene	Chr1:19887522-19888722 (+)
DBA/2J	MGP_DBA2J_G0009923	pseudogene	Chr1:17848240-17849440 (+)
FVB/NJ	MGP_FVBNJ_G0009948	pseudogene	Chr1:17610124-17611324 (+)
LP/J	MGP_LPJ_G0010016	pseudogene	Chr1:18800082-18801280 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009908	pseudogene	Chr1:20834230-20835430 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010220	pseudogene	Chr1:18371372-18372572 (+)
PWK/PhJ	MGP_PWKPhJ_G0009678	pseudogene	Chr1:17582129-17583329 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009496	pseudogene	Chr1:18458994-18460198 (+)
WSB/EiJ	MGP_WSBEiJ_G0009836	pseudogene	Chr1:18301897-18303100 (+)

Homology

• Gene Tree
  Gm28064
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100929 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100929	Ensembl Gene Model | MGI Sequence Detail	1204	C57BL/6J
transcript	ENSMUST00000185639	Ensembl | MGI Sequence Detail	858	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;