Gm28111 Gene Detail

Summary

• Symbol
  Gm28111
• Name
  predicted gene 28111

• Feature Type
  lncRNA gene
• IDs
  MGI:5578817
  NCBI Gene: 102636702
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:106518127-106520763 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578817	lncRNA gene	Chr9:106518040-106520763 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004682	antisense lncRNA gene	Chr9:108457193-108459823 (+)
A/J	MGP_AJ_G0004663	antisense lncRNA gene	Chr9:104526348-104528977 (+)
AKR/J	MGP_AKRJ_G0004646	antisense lncRNA gene	Chr9:107134375-107136997 (+)
BALB/cJ	MGP_BALBcJ_G0004647	antisense lncRNA gene	Chr9:104213038-104215660 (+)
C3H/HeJ	MGP_C3HHeJ_G0004596	antisense lncRNA gene	Chr9:107546869-107550535 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004797	antisense lncRNA gene	Chr9:111447725-111451758 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004241	antisense lncRNA gene	Chr9:102013366-102016016 (+)
CAST/EiJ	MGP_CASTEiJ_G0004552	antisense lncRNA gene	Chr9:107465789-107469339 (+)
CBA/J	MGP_CBAJ_G0004590	antisense lncRNA gene	Chr9:115401897-115404534 (+)
DBA/2J	MGP_DBA2J_G0004605	antisense lncRNA gene	Chr9:103991399-103994032 (+)
FVB/NJ	MGP_FVBNJ_G0004623	antisense lncRNA gene	Chr9:102770549-102773648 (+)
LP/J	MGP_LPJ_G0004686	antisense lncRNA gene	Chr9:108671959-108674582 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004610	antisense lncRNA gene	Chr9:116974608-116977242 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004796	antisense lncRNA gene	Chr9:107396808-107399430 (+)
PWK/PhJ	MGP_PWKPhJ_G0004505	antisense lncRNA gene	Chr9:104294520-104297180 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004442	antisense lncRNA gene	Chr9:107468177-107470799 (+)
WSB/EiJ	MGP_WSBEiJ_G0004595	antisense lncRNA gene	Chr9:107298463-107301094 (+)

Homology

• Gene Tree
  Gm28111
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101411 (Evidence)
• NCBI Gene
  102636702

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101411	Ensembl Gene Model | MGI Sequence Detail	2637	C57BL/6J
transcript	ENSMUST00000187786	Ensembl | MGI Sequence Detail	1393	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;