Gm28119 Gene Detail

Summary

• Symbol
  Gm28119
• Name
  predicted gene 28119

• Feature Type
  lncRNA gene
• IDs
  MGI:5578825
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr9:41493204-41493579 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578825	lncRNA gene	Chr9:41493204-41493579 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037091	sense intronic lncRNA gene	Chr9:39880939-39881248 (+)
A/J	MGP_AJ_G0037079	sense intronic lncRNA gene	Chr9:38837639-38837948 (+)
AKR/J	MGP_AKRJ_G0037026	sense intronic lncRNA gene	Chr9:39569463-39569780 (+)
BALB/cJ	MGP_BALBcJ_G0037070	sense intronic lncRNA gene	Chr9:38570757-38571066 (+)
C3H/HeJ	MGP_C3HHeJ_G0036757	sense intronic lncRNA gene	Chr9:40087766-40088075 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037582	sense intronic lncRNA gene	Chr9:41134773-41135106 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034626	sense intronic lncRNA gene	Chr9:38458414-38458747 (+)
CAST/EiJ	MGP_CASTEiJ_G0035943	sense intronic lncRNA gene	Chr9:39852139-39852448 (+)
CBA/J	MGP_CBAJ_G0036732	sense intronic lncRNA gene	Chr9:42574575-42574884 (+)
DBA/2J	MGP_DBA2J_G0036907	sense intronic lncRNA gene	Chr9:38756753-38757070 (+)
FVB/NJ	MGP_FVBNJ_G0036857	sense intronic lncRNA gene	Chr9:37991975-37992284 (+)
LP/J	MGP_LPJ_G0036954	sense intronic lncRNA gene	Chr9:40152325-40152634 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036864	sense intronic lncRNA gene	Chr9:44598181-44598490 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037700	sense intronic lncRNA gene	Chr9:39501711-39502020 (+)
PWK/PhJ	MGP_PWKPhJ_G0035637	sense intronic lncRNA gene	Chr9:38584162-38584564 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035445	sense intronic lncRNA gene	Chr9:39729839-39730148 (+)
WSB/EiJ	MGP_WSBEiJ_G0036145	sense intronic lncRNA gene	Chr9:39528308-39528617 (+)

Homology

• Gene Tree
  Gm28119
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100158 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100158	Ensembl Gene Model | MGI Sequence Detail	376	C57BL/6J
transcript	ENSMUST00000185538	Ensembl | MGI Sequence Detail	298	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28119:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84515	Chr9:41491231-41491263 (+)	-1,957 bp
Tssr84516	Chr9:41491266-41491287 (+)	-1,927 bp
Tssr84517	Chr9:41491299-41491313 (+)	-1,898 bp
Tssr84518	Chr9:41491999-41492013 (+)	-1,198 bp
Tssr84519	Chr9:41492047-41492048 (+)	-1,156 bp
Tssr84520	Chr9:41492199-41492218 (+)	-995 bp
Tssr84521	Chr9:41492240-41492263 (+)	-952 bp
Tssr84522	Chr9:41492264-41492300 (+)	-922 bp
Tssr84523	Chr9:41492362-41492396 (+)	-825 bp
Tssr84524	Chr9:41492543-41492556 (+)	-654 bp
Tssr84525	Chr9:41492596-41492612 (+)	-600 bp
Tssr84526	Chr9:41492627-41492647 (+)	-567 bp