Gm28139 Gene Detail

Summary

• Symbol
  Gm28139
• Name
  predicted gene 28139

• Feature Type
  lncRNA gene
• IDs
  MGI:5578845
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:66476697-66477641 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578845	lncRNA gene	Chr10:66476697-66477641 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005126	lincRNA gene	Chr10:66329621-66330565 (+)
A/J	MGP_AJ_G0005109	lincRNA gene	Chr10:64141349-64142293 (+)
AKR/J	MGP_AKRJ_G0005087	lincRNA gene	Chr10:65892175-65893119 (+)
BALB/cJ	MGP_BALBcJ_G0005090	lincRNA gene	Chr10:64330164-64331108 (+)
C3H/HeJ	MGP_C3HHeJ_G0005039	lincRNA gene	Chr10:65862209-65863153 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005240	lincRNA gene	Chr10:68752203-68753147 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004646	lincRNA gene	Chr10:60857183-60858125 (+)
CAST/EiJ	MGP_CASTEiJ_G0004986	lincRNA gene	Chr10:65903662-65904605 (+)
CBA/J	MGP_CBAJ_G0005029	lincRNA gene	Chr10:71351126-71352070 (+)
DBA/2J	MGP_DBA2J_G0005048	lincRNA gene	Chr10:63503537-63504481 (+)
FVB/NJ	MGP_FVBNJ_G0005070	lincRNA gene	Chr10:62686847-62687791 (+)
LP/J	MGP_LPJ_G0005127	lincRNA gene	Chr10:66735622-66736565 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005053	lincRNA gene	Chr10:73620294-73621238 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005247	lincRNA gene	Chr10:65765538-65766482 (+)
PWK/PhJ	MGP_PWKPhJ_G0004937	lincRNA gene	Chr10:63310373-63311317 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004862	lincRNA gene	Chr10:65100172-65101121 (+)
WSB/EiJ	MGP_WSBEiJ_G0005033	lincRNA gene	Chr10:65693499-65694443 (+)

Homology

• Gene Tree
  Gm28139
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28139
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101338 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101338	Ensembl Gene Model | MGI Sequence Detail	945	C57BL/6J
transcript	ENSMUST00000189480	Ensembl | MGI Sequence Detail	643	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87