Gm28170 Gene Detail

Summary

• Symbol
  Gm28170
• Name
  predicted gene 28170

• Feature Type
  lncRNA gene
• IDs
  MGI:5578876
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrY:32260391-32262754 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome Y, Syntenic

Strain
Comparison

• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578876	lncRNA gene	ChrY:32260391-32262754 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm28170
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm28170
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000101779 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101779	Ensembl Gene Model | MGI Sequence Detail	2364	C57BL/6J
transcript	ENSMUST00000186892	Ensembl | MGI Sequence Detail	622	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:249943 MacBride MM, et al., Mild reproductive impact of a Y chromosome deletion on a C57BL/6J substrain. Mamm Genome. 2017 Jun;28(5-6):155-165
• Latest
  J:250379 Fischer M, et al., Large deletion on the Y-chromosome long arm (Yq) of C57BL/6JBomTac inbred mice. Mamm Genome. 2017 Feb;28(1-2):31-37