Gm28172 Gene Detail

Summary

• Symbol
  Gm28172
• Name
  predicted gene 28172

• Feature Type
  lncRNA gene
• IDs
  MGI:5578878
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:189900867-189901830 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578878	lncRNA gene	Chr1:189900867-189901830 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002822	antisense lncRNA gene	Chr1:197127383-197128346 (+)
A/J	MGP_AJ_G0002799	antisense lncRNA gene	Chr1:189054650-189055613 (+)
AKR/J	MGP_AKRJ_G0002780	antisense lncRNA gene	Chr1:194634340-194635303 (+)
BALB/cJ	MGP_BALBcJ_G0002786	antisense lncRNA gene	Chr1:189729253-189730216 (+)
C3H/HeJ	MGP_C3HHeJ_G0002744	antisense lncRNA gene	Chr1:195503999-195504962 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002928	antisense lncRNA gene	Chr1:203413540-203414503 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002475	antisense lncRNA gene	Chr1:179970677-179971642 (+)
CAST/EiJ	MGP_CASTEiJ_G0002716	antisense lncRNA gene	Chr1:195069843-195070806 (+)
CBA/J	MGP_CBAJ_G0002739	antisense lncRNA gene	Chr1:211000059-211001022 (+)
DBA/2J	MGP_DBA2J_G0002746	antisense lncRNA gene	Chr1:187792669-187793632 (+)
FVB/NJ	MGP_FVBNJ_G0002766	antisense lncRNA gene	Chr1:185907607-185908570 (+)
LP/J	MGP_LPJ_G0002822	antisense lncRNA gene	Chr1:198309311-198310274 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002756	antisense lncRNA gene	Chr1:217692892-217693855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002933	antisense lncRNA gene	Chr1:194544520-194545483 (+)
PWK/PhJ	MGP_PWKPhJ_G0002674	antisense lncRNA gene	Chr1:187059033-187059996 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002624	antisense lncRNA gene	Chr1:193511746-193512707 (+)
WSB/EiJ	MGP_WSBEiJ_G0002745	antisense lncRNA gene	Chr1:194751002-194751965 (+)

Homology

• Gene Tree
  Gm28172
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099404 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099404	Ensembl Gene Model | MGI Sequence Detail	964	C57BL/6J
transcript	ENSMUST00000189880	Ensembl | MGI Sequence Detail	506	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;