Gm28230 Gene Detail

Summary

• Symbol
  Gm28230
• Name
  predicted gene 28230

• Feature Type
  protein coding gene
• IDs
  MGI:5578936
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:74557072-74578262 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  320 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578936	protein coding gene	Chr2:74557072-74578262 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0025853	protein coding gene	Chr2:75040527-75064347 (+)
A/J	MGP_AJ_G0025831	protein coding gene	Chr2:72107813-72128868 (+)
AKR/J	MGP_AKRJ_G0025799	protein coding gene	Chr2:74061177-74083887 (+)
BALB/cJ	MGP_BALBcJ_G0025825	protein coding gene	Chr2:72295138-72316482 (+)
C3H/HeJ	MGP_C3HHeJ_G0025585	protein coding gene	Chr2:74249279-74274461 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0026272	protein coding gene	Chr2:77277582-77300688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023675	protein coding gene	Chr2:69531246-69552594 (+)
CAST/EiJ	MGP_CASTEiJ_G0025049	protein coding gene	Chr2:74566309-74588989 (+)
CBA/J	MGP_CBAJ_G0025566	protein coding gene	Chr2:80100406-80128148 (+)
DBA/2J	MGP_DBA2J_G0025697	protein coding gene	Chr2:71715308-71737503 (+)
FVB/NJ	MGP_FVBNJ_G0025659	protein coding gene	Chr2:71103805-71125452 (+)
LP/J	MGP_LPJ_G0025785	protein coding gene	Chr2:74904879-74926146 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025690	protein coding gene	Chr2:82011284-82032482 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0026329	protein coding gene	Chr2:74177698-74200715 (+)
PWK/PhJ	MGP_PWKPhJ_G0024790	protein coding gene	Chr2:71645824-71667355 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0024598	protein coding gene	Chr2:74410371-74431442 (+)
WSB/EiJ	MGP_WSBEiJ_G0025117	protein coding gene	Chr2:74615413-74638564 (+)

Homology

• Gene Tree
  Gm28230
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm28230
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000100642 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100642	Ensembl Gene Model | MGI Sequence Detail	21191	C57BL/6J
transcript	ENSMUST00000053932	Ensembl | MGI Sequence Detail	3527	Not Applicable
polypeptide	ENSMUSP00000051355	Ensembl | MGI Sequence Detail	144	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR050609 Antp homeobox family, Deformed subfamily
  IPR001827 Homeobox protein, antennapedia type, conserved site

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm28230:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18439	Chr2:74557534-74557545 (+)	468 bp
Tssr18440	Chr2:74557593-74557614 (+)	532 bp
Tssr18441	Chr2:74560173-74560177 (+)	3,103 bp
Tssr535	Chr2:74566740-74566779 (+)	9,688 bp
Tssr18442	Chr2:74576020-74576025 (+)	18,951 bp
Tssr18443	Chr2:74576028-74576037 (+)	18,961 bp
Tssr18444	Chr2:74576063-74576102 (+)	19,011 bp