Gm28239 Pseudogene Detail

Summary

• Symbol
  Gm28239
• Name
  predicted gene 28239

• Feature Type
  pseudogene
• IDs
  MGI:5578945
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:22308073-22308519 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578945	pseudogene	Chr1:22308073-22308519 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010031	pseudogene	Chr1:19975218-19975664 (+)
A/J	MGP_AJ_G0010013	pseudogene	Chr1:19654473-19654919 (+)
AKR/J	MGP_AKRJ_G0009995	pseudogene	Chr1:19776218-19776664 (+)
BALB/cJ	MGP_BALBcJ_G0010002	pseudogene	Chr1:19376971-19377417 (+)
C3H/HeJ	MGP_C3HHeJ_G0009932	pseudogene	Chr1:19806257-19806703 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010251	pseudogene	Chr1:20908408-20908854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009023	pseudogene	Chr1:17800582-17801108 (+)
CAST/EiJ	MGP_CASTEiJ_G0009778	pseudogene	Chr1:19905378-19905834 (+)
CBA/J	MGP_CBAJ_G0009906	pseudogene	Chr1:21406928-21407374 (+)
DBA/2J	MGP_DBA2J_G0009928	pseudogene	Chr1:19158064-19158510 (+)
FVB/NJ	MGP_FVBNJ_G0009954	pseudogene	Chr1:18933890-18934336 (+)
LP/J	MGP_LPJ_G0010022	pseudogene	Chr1:20191800-20192246 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009913	pseudogene	Chr1:22388091-22388537 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010225	pseudogene	Chr1:19720333-19720779 (+)
PWK/PhJ	MGP_PWKPhJ_G0009683	pseudogene	Chr1:18932775-18933221 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009500	pseudogene	Chr1:19812462-19813006 (+)
WSB/EiJ	MGP_WSBEiJ_G0009840	pseudogene	Chr1:19684512-19684958 (+)

Homology

• Gene Tree
  Gm28239
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28239
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100418 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100418	Ensembl Gene Model | MGI Sequence Detail	447	C57BL/6J
transcript	ENSMUST00000190225	Ensembl | MGI Sequence Detail	447	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;