Gm28269 Gene Detail

Summary

• Symbol
  Gm28269
• Name
  predicted gene 28269

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5578975
  NCBI Gene: 100043180
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:21609679-21611336 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578975	protein coding gene	ChrX:21609673-21611350 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0035610	protein coding gene	ChrX:16663414-16665071 (-)
A/J	MGP_AJ_G0035587	protein coding gene	ChrX:16756304-16757961 (-)
AKR/J	MGP_AKRJ_G0035520	protein coding gene	ChrX:17352360-17354017 (-)
BALB/cJ	MGP_BALBcJ_G0035580	protein coding gene	ChrX:16502638-16504295 (-)
C3H/HeJ	MGP_C3HHeJ_G0035298	protein coding gene	ChrX:16884910-16886567 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036116	protein coding gene	ChrX:17147965-17149622 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032980	protein coding gene	ChrX:15036845-15038890 (-)
CAST/EiJ	MGP_CASTEiJ_G0034589	protein coding gene	ChrX:16180641-16182303 (-)
CBA/J	MGP_CBAJ_G0035267	protein coding gene	ChrX:17902883-17904540 (-)
DBA/2J	MGP_DBA2J_G0035419	protein coding gene	ChrX:16567489-16569146 (-)
FVB/NJ	MGP_FVBNJ_G0035365	protein coding gene	ChrX:16450602-16452229 (-)
LP/J	MGP_LPJ_G0035501	protein coding gene	ChrX:16935933-16937590 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035409	protein coding gene	ChrX:18210181-18211838 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036123	protein coding gene	ChrX:16604323-16605980 (-)
PWK/PhJ	MGP_PWKPhJ_G0034290	protein coding gene	ChrX:15714818-15716585 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0034130	protein coding gene	ChrX:16607220-16608888 (-)
WSB/EiJ	MGP_WSBEiJ_G0034724	protein coding gene	ChrX:16453036-16454723 (-)

Homology

• Gene Tree
  Gm28269
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000101818 (Evidence)
• NCBI Gene
  100043180

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101818	Ensembl Gene Model | MGI Sequence Detail	1658	C57BL/6J
transcript	ENSMUST00000189511	Ensembl | MGI Sequence Detail	559	Not Applicable
polypeptide	ENSMUSP00000141034	Ensembl | MGI Sequence Detail	125	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 5
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163115	ChrX:21611345-21611353 (-)	-13 bp