Gm28309 Gene Detail

Summary

• Symbol
  Gm28309
• Name
  predicted gene 28309

• Feature Type
  lncRNA gene
• IDs
  MGI:5579015
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:74513790-74524538 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579015	lncRNA gene	Chr2:74513790-74524538 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015429	unclassified non-coding RNA gene	Chr2:74997648-75008370 (+)
A/J	MGP_AJ_G0015404	unclassified non-coding RNA gene	Chr2:72064776-72075495 (+)
AKR/J	MGP_AKRJ_G0015368	unclassified non-coding RNA gene	Chr2:74017997-74028715 (+)
BALB/cJ	MGP_BALBcJ_G0015368	unclassified non-coding RNA gene	Chr2:72251878-72262135 (+)
C3H/HeJ	MGP_C3HHeJ_G0015192	unclassified non-coding RNA gene	Chr2:74205808-74216557 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015822	unclassified non-coding RNA gene	Chr2:77231775-77242511 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013562	unclassified non-coding RNA gene	Chr2:69487767-69498718 (+)
CAST/EiJ	MGP_CASTEiJ_G0014743	unclassified non-coding RNA gene	Chr2:74523001-74533544 (+)
CBA/J	MGP_CBAJ_G0015171	unclassified non-coding RNA gene	Chr2:80052932-80063660 (+)
DBA/2J	MGP_DBA2J_G0015266	unclassified non-coding RNA gene	Chr2:71671306-71682052 (+)
FVB/NJ	MGP_FVBNJ_G0015273	unclassified non-coding RNA gene	Chr2:71061017-71071760 (+)
LP/J	MGP_LPJ_G0015346	unclassified non-coding RNA gene	Chr2:74861753-74872503 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015299	unclassified non-coding RNA gene	Chr2:81966568-81977280 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015861	unclassified non-coding RNA gene	Chr2:74133507-74144247 (+)
PWK/PhJ	MGP_PWKPhJ_G0014531	unclassified non-coding RNA gene	Chr2:71601834-71612741 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014319	unclassified non-coding RNA gene	Chr2:74367327-74378041 (+)
WSB/EiJ	MGP_WSBEiJ_G0014850	unclassified non-coding RNA gene	Chr2:74569459-74580190 (+)

Homology

• Gene Tree
  Gm28309
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Spontaneous
  1
• Targeted
  4
• Genomic Mutations
  6 involving Gm28309
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099521 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099521	Ensembl Gene Model | MGI Sequence Detail	10749	C57BL/6J
transcript	ENSMUST00000136302	Ensembl | MGI Sequence Detail	623	Not Applicable

References

• Summaries
  All 10

  Phenotypes 8
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm28309:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18399	Chr2:74512335-74512351 (+)	-1,447 bp
Tssr18400	Chr2:74512362-74512374 (+)	-1,422 bp
Tssr18401	Chr2:74512630-74512670 (+)	-1,140 bp
Tssr18402	Chr2:74513803-74513812 (+)	18 bp
Tssr18403	Chr2:74514177-74514188 (+)	393 bp
Tssr18404	Chr2:74514237-74514245 (+)	451 bp
Tssr18405	Chr2:74516897-74516901 (+)	3,109 bp