Gm28376 Gene Detail

Summary

• Symbol
  Gm28376
• Name
  predicted gene 28376

• Feature Type
  lncRNA gene
• IDs
  MGI:5579082
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:16968409-17161855 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  4964 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579082	lncRNA gene	Chr1:16968409-17161855 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002647	antisense lncRNA gene	Chr1:14551908-14604108 (+)
A/J	MGP_AJ_G0002623	antisense lncRNA gene	Chr1:14359005-14426928 (+)
AKR/J	MGP_AKRJ_G0002603	antisense lncRNA gene	Chr1:14382675-14440694 (+)
BALB/cJ	MGP_BALBcJ_G0002609	antisense lncRNA gene	Chr1:13954176-14142849 (+)
C3H/HeJ	MGP_C3HHeJ_G0002569	antisense lncRNA gene	Chr1:14431037-14491424 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002753	antisense lncRNA gene	Chr1:15080583-15280897 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002301	antisense lncRNA gene	Chr1:12938145-12988427 (+)
CAST/EiJ	MGP_CASTEiJ_G0002543	antisense lncRNA gene	Chr1:14481305-14535451 (+)
CBA/J	MGP_CBAJ_G0002564	antisense lncRNA gene	Chr1:15545020-15599546 (+)
DBA/2J	MGP_DBA2J_G0002569	antisense lncRNA gene	Chr1:13989892-14044935 (+)
FVB/NJ	MGP_FVBNJ_G0002589	antisense lncRNA gene	Chr1:13615242-13807627 (+)
LP/J	MGP_LPJ_G0002649	antisense lncRNA gene	Chr1:14619547-14812689 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002580	antisense lncRNA gene	Chr1:16014508-16242332 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002758	antisense lncRNA gene	Chr1:14217907-14413769 (+)
PWK/PhJ	MGP_PWKPhJ_G0002500	antisense lncRNA gene	Chr1:13718031-13778219 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002453	antisense lncRNA gene	Chr1:14510894-14567516 (+)
WSB/EiJ	MGP_WSBEiJ_G0002572	antisense lncRNA gene	Chr1:14306285-14362716 (+)

Homology

• Gene Tree
  Gm28376
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101640 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101640	Ensembl Gene Model | MGI Sequence Detail	193447	C57BL/6J
transcript	ENSMUST00000186604	Ensembl | MGI Sequence Detail	176	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;