Gm28416 Pseudogene Detail

Summary

• Symbol
  Gm28416
• Name
  predicted gene 28416

• Feature Type
  pseudogene
• IDs
  MGI:5579122
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:34562797-34563088 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579122	pseudogene	Chr1:34562797-34563088 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010066	pseudogene	Chr1:32921580-32921872 (-)
A/J	MGP_AJ_G0010054	pseudogene	Chr1:32127237-32127528 (-)
AKR/J	MGP_AKRJ_G0010036	pseudogene	Chr1:32524234-32524525 (-)
BALB/cJ	MGP_BALBcJ_G0010041	pseudogene	Chr1:31785413-31785704 (-)
C3H/HeJ	MGP_C3HHeJ_G0009974	pseudogene	Chr1:32722551-32722842 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010290	pseudogene	Chr1:34430889-34431180 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009057	pseudogene	Chr1:29288522-29288813 (-)
CAST/EiJ	MGP_CASTEiJ_G0009809	pseudogene	Chr1:32594934-32595226 (-)
CBA/J	MGP_CBAJ_G0009946	pseudogene	Chr1:35384032-35384323 (-)
DBA/2J	MGP_DBA2J_G0009968	pseudogene	Chr1:31462810-31463102 (-)
FVB/NJ	MGP_FVBNJ_G0009995	pseudogene	Chr1:31012951-31013242 (-)
LP/J	MGP_LPJ_G0010058	pseudogene	Chr1:33261950-33262242 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009951	pseudogene	Chr1:37639345-37639637 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010266	pseudogene	Chr1:32517692-32517983 (-)
PWK/PhJ	MGP_PWKPhJ_G0009718	pseudogene	Chr1:31197791-31198082 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009532	pseudogene	Chr1:32494779-32495070 (-)
WSB/EiJ	MGP_WSBEiJ_G0009873	pseudogene	Chr1:32494713-32495004 (-)

Homology

• Gene Tree
  Gm28416
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28416
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101116 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101116	Ensembl Gene Model | MGI Sequence Detail	292	C57BL/6J
transcript	ENSMUST00000188334	Ensembl | MGI Sequence Detail	292	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;