Gm28465 Gene Detail

Summary

• Symbol
  Gm28465
• Name
  predicted gene 28465

• Feature Type
  lncRNA gene
• IDs
  MGI:5579171
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:6445752-6448776 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic

Strain
Comparison

• SNPs within 2kb
  275 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579171	lncRNA gene	Chr13:6445752-6448776 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020213	protein coding gene	Chr13:2967572-2971209 (+)
A/J	MGP_AJ_G0020169	protein coding gene	Chr13:3005249-3007712 (+)
AKR/J	MGP_AKRJ_G0020144	protein coding gene	Chr13:3072337-3074868 (+)
BALB/cJ	MGP_BALBcJ_G0020152	protein coding gene	Chr13:2993866-2996317 (+)
C3H/HeJ	MGP_C3HHeJ_G0019956	protein coding gene	Chr13:3174471-3177061 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020599	protein coding gene	Chr13:3138599-3141753 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018209	protein coding gene	Chr13:2916601-2919083 (+)
CAST/EiJ	MGP_CASTEiJ_G0019496	protein coding gene	Chr13:2967151-2969693 (+)
CBA/J	MGP_CBAJ_G0019923	protein coding gene	Chr13:3207627-3212061 (+)
DBA/2J	MGP_DBA2J_G0020040	protein coding gene	Chr13:2907148-2909670 (+)
FVB/NJ	MGP_FVBNJ_G0020025	protein coding gene	Chr13:2804255-2806781 (+)
LP/J	MGP_LPJ_G0020114	protein coding gene	Chr13:3110508-3112997 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020061	protein coding gene	Chr13:3452961-3455467 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020627	protein coding gene	Chr13:3024736-3027225 (+)
PWK/PhJ	MGP_PWKPhJ_G0019257	protein coding gene	Chr13:2952225-2954859 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019064	protein coding gene	Chr13:3098880-3101399 (+)
WSB/EiJ	MGP_WSBEiJ_G0019554	protein coding gene	Chr13:2956773-2960734 (+)

Homology

• Gene Tree
  Gm28465
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101540 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101540	Ensembl Gene Model | MGI Sequence Detail	3025	C57BL/6J
transcript	ENSMUST00000220779	Ensembl | MGI Sequence Detail	1701	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;