Gm28493 Gene Detail

Summary

• Symbol
  Gm28493
• Name
  predicted gene 28493

• Feature Type
  lncRNA gene
• IDs
  MGI:5579199
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:114966031-114968267 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579199	lncRNA gene	Chr2:114966031-114968267 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005991	lincRNA gene	Chr2:117670158-117672394 (+)
A/J	MGP_AJ_G0005984	lincRNA gene	Chr2:112909491-112911726 (+)
AKR/J	MGP_AKRJ_G0005958	lincRNA gene	Chr2:116036126-116038362 (+)
BALB/cJ	MGP_BALBcJ_G0005962	lincRNA gene	Chr2:113147106-113149341 (+)
C3H/HeJ	MGP_C3HHeJ_G0005910	lincRNA gene	Chr2:116473892-116476128 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006121	lincRNA gene	Chr2:121563218-121565454 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005453	lincRNA gene	Chr2:108025025-108027227 (+)
CAST/EiJ	MGP_CASTEiJ_G0005845	lincRNA gene	Chr2:116756750-116758983 (+)
CBA/J	MGP_CBAJ_G0005894	lincRNA gene	Chr2:125844095-125846331 (+)
DBA/2J	MGP_DBA2J_G0005915	lincRNA gene	Chr2:112335342-112337577 (+)
FVB/NJ	MGP_FVBNJ_G0005940	lincRNA gene	Chr2:111182405-111184641 (+)
LP/J	MGP_LPJ_G0005996	lincRNA gene	Chr2:117987730-117989966 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005927	lincRNA gene	Chr2:130230194-130232430 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006120	lincRNA gene	Chr2:116144735-116146970 (+)
PWK/PhJ	MGP_PWKPhJ_G0005794	lincRNA gene	Chr2:111866717-111868951 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005706	lincRNA gene	Chr2:115254589-115256824 (+)
WSB/EiJ	MGP_WSBEiJ_G0005898	lincRNA gene	Chr2:116950553-116952789 (+)

Homology

• Gene Tree
  Gm28493
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28493
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099802 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099802	Ensembl Gene Model | MGI Sequence Detail	2237	C57BL/6J
transcript	ENSMUST00000188427	Ensembl | MGI Sequence Detail	604	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17