Gm28500 Pseudogene Detail

Summary

• Symbol
  Gm28500
• Name
  predicted gene 28500

• Feature Type
  pseudogene
• IDs
  MGI:5579206
  NCBI Gene: 105246716
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:138305002-138305152 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579206	pseudogene	Chr1:138303680-138305152 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010357	pseudogene	Chr1:142405473-142405623 (+)
A/J	MGP_AJ_G0010345	pseudogene	Chr1:136883488-136883638 (+)
AKR/J	MGP_AKRJ_G0010316	pseudogene	Chr1:141007205-141007355 (+)
BALB/cJ	MGP_BALBcJ_G0010321	pseudogene	Chr1:137223190-137223340 (+)
C3H/HeJ	MGP_C3HHeJ_G0010255	pseudogene	Chr1:141102918-141103068 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010596	pseudogene	Chr1:147413686-147413836 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009279	pseudogene	Chr1:129933391-129933541 (+)
CAST/EiJ	MGP_CASTEiJ_G0010074	pseudogene	Chr1:140260796-140260946 (+)
CBA/J	MGP_CBAJ_G0010224	pseudogene	Chr1:152496977-152497127 (+)
DBA/2J	MGP_DBA2J_G0010258	pseudogene	Chr1:135877039-135877189 (+)
FVB/NJ	MGP_FVBNJ_G0010283	pseudogene	Chr1:134526636-134526786 (+)
LP/J	MGP_LPJ_G0010342	pseudogene	Chr1:143512749-143512899 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010239	pseudogene	Chr1:158156106-158156256 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010558	pseudogene	Chr1:140787057-140787207 (+)
PWK/PhJ	MGP_PWKPhJ_G0009976	pseudogene	Chr1:134960593-134960743 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009788	pseudogene	Chr1:139740208-139740358 (+)
WSB/EiJ	MGP_WSBEiJ_G0010144	pseudogene	Chr1:140800315-140800465 (+)

Homology

• Gene Tree
  Gm28500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101793 (Evidence)
• NCBI Gene
  105246716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101793	Ensembl Gene Model | MGI Sequence Detail	151	C57BL/6J
transcript	ENSMUST00000190286	Ensembl | MGI Sequence Detail	151	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45