Gm28530 Pseudogene Detail

Summary

• Symbol
  Gm28530
• Name
  predicted gene 28530

• Feature Type
  pseudogene
• IDs
  MGI:5579236
  NCBI Gene: 102639990
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:98183703-98184279 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579236	pseudogene	Chr9:98182180-98186276 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014232	pseudogene	Chr9:99599696-99600272 (+)
A/J	MGP_AJ_G0014247	pseudogene	Chr9:96100767-96101343 (+)
AKR/J	MGP_AKRJ_G0014173	pseudogene	Chr9:98444429-98445005 (+)
BALB/cJ	MGP_BALBcJ_G0014197	pseudogene	Chr9:95781478-95782054 (+)
C3H/HeJ	MGP_C3HHeJ_G0014029	pseudogene	Chr9:98846373-98846949 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014649	pseudogene	Chr9:102435605-102437941 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014010	pseudogene	Chr9:105974837-105975413 (+)
DBA/2J	MGP_DBA2J_G0014095	pseudogene	Chr9:95615826-95616402 (+)
FVB/NJ	MGP_FVBNJ_G0014093	pseudogene	Chr9:94446831-94447506 (+)
LP/J	MGP_LPJ_G0014182	pseudogene	Chr9:99851951-99852527 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014128	pseudogene	Chr9:107925031-107927151 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014621	pseudogene	Chr9:98668082-98668709 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm28530
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28530
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000101452 (Evidence)
• NCBI Gene
  102639990

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101452	Ensembl Gene Model | MGI Sequence Detail	577	C57BL/6J
transcript	ENSMUST00000190473	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;