Gm28539 Gene Detail

Summary

• Symbol
  Gm28539
• Name
  predicted gene 28539

• Feature Type
  protein coding gene
• IDs
  MGI:5579245
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:18655334-18774997 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579245	protein coding gene	Chr16:18655334-18774997 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022621	protein coding gene	Chr16:16101899-16224337 (+)
A/J	MGP_AJ_G0022582	protein coding gene	Chr16:15293539-15412742 (+)
AKR/J	MGP_AKRJ_G0022559	protein coding gene	Chr16:15911266-16037603 (+)
BALB/cJ	MGP_BALBcJ_G0022587	protein coding gene	Chr16:15445101-15575722 (+)
C3H/HeJ	MGP_C3HHeJ_G0022354	protein coding gene	Chr16:16063188-16192875 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023036	protein coding gene	Chr16:16418400-16539385 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020556	protein coding gene	Chr16:15327674-16204483 (+)
CAST/EiJ	MGP_CASTEiJ_G0021881	protein coding gene	Chr16:15961119-16077319 (+)
CBA/J	MGP_CBAJ_G0022323	protein coding gene	Chr16:17087466-17219299 (+)
DBA/2J	MGP_DBA2J_G0022455	protein coding gene	Chr16:15205258-15323111 (+)
FVB/NJ	MGP_FVBNJ_G0022430	protein coding gene	Chr16:15269427-15393440 (+)
LP/J	MGP_LPJ_G0022522	protein coding gene	Chr16:15848995-15976900 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022452	protein coding gene	Chr16:16726931-16865266 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023047	protein coding gene	Chr16:15829946-15953162 (+)
PWK/PhJ	MGP_PWKPhJ_G0021623	protein coding gene	Chr16:15500431-15613938 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021451	protein coding gene	Chr16:15790391-15903526 (+)
WSB/EiJ	MGP_WSBEiJ_G0021927	protein coding gene	Chr16:15855745-15976909 (+)

Homology

• Gene Tree
  Gm28539
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm28539
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000099908 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099908	Ensembl Gene Model | MGI Sequence Detail	119664	C57BL/6J
transcript	ENSMUST00000190050	Ensembl | MGI Sequence Detail	2982	Not Applicable
polypeptide	ENSMUSP00000141101	Ensembl | MGI Sequence Detail	92	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR021475 Plasticity-Associated Neural Transcript Short/Early meiotic induction protein 1-like

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:67409 Lindsay EA, et al., Tbx1 haploinsufficiency in the DiGeorge syndrome region causes aortic arch defects in mice. Nature. 2001 Mar 1;410(6824):97-101
• Latest
  J:304974 Saito R, et al., Two novel mouse models mimicking minor deletions in 22q11.2 deletion syndrome revealed the contribution of each deleted region to psychiatric disorders. Mol Brain. 2021 Apr 12;14(1):68