Gm28543 Gene Detail

Summary

• Symbol
  Gm28543
• Name
  predicted gene 28543

• Feature Type
  lncRNA gene
• IDs
  MGI:5579249
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:128861454-128864193 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579249	lncRNA gene	Chr3:128861454-128864193 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006303	lincRNA gene	Chr3:131680102-131682841 (-)
A/J	MGP_AJ_G0006296	lincRNA gene	Chr3:127121142-127123881 (-)
AKR/J	MGP_AKRJ_G0006272	lincRNA gene	Chr3:130407952-130410691 (-)
BALB/cJ	MGP_BALBcJ_G0006270	lincRNA gene	Chr3:126968886-126971625 (-)
C3H/HeJ	MGP_C3HHeJ_G0006222	lincRNA gene	Chr3:130788365-130791104 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006435	lincRNA gene	Chr3:136399735-136402474 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005730	lincRNA gene	Chr3:122293551-122296251 (-)
CAST/EiJ	MGP_CASTEiJ_G0006155	lincRNA gene	Chr3:130446742-130449483 (-)
CBA/J	MGP_CBAJ_G0006205	lincRNA gene	Chr3:140975820-140978559 (-)
DBA/2J	MGP_DBA2J_G0006227	lincRNA gene	Chr3:126320183-126322922 (-)
FVB/NJ	MGP_FVBNJ_G0006248	lincRNA gene	Chr3:123900746-123903485 (-)
LP/J	MGP_LPJ_G0006308	lincRNA gene	Chr3:133202910-133205649 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006239	lincRNA gene	Chr3:148965728-148968467 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006441	lincRNA gene	Chr3:130076671-130079410 (-)
PWK/PhJ	MGP_PWKPhJ_G0006092	lincRNA gene	Chr3:126045847-126048589 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006006	lincRNA gene	Chr3:128138733-128141475 (-)
WSB/EiJ	MGP_WSBEiJ_G0006202	lincRNA gene	Chr3:130786570-130789309 (-)

Homology

• Gene Tree
  Gm28543
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28543
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099640 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099640	Ensembl Gene Model | MGI Sequence Detail	2740	C57BL/6J
transcript	ENSMUST00000188986	Ensembl | MGI Sequence Detail	509	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;