Gm28552 Pseudogene Detail

Summary

• Symbol
  Gm28552
• Name
  predicted gene 28552

• Feature Type
  pseudogene
• IDs
  MGI:5579258
  NCBI Gene: 101696218
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:83362085-83362472 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579258	pseudogene	Chr9:83362070-83362509 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014190	pseudogene	Chr9:84150700-84151087 (+)
A/J	MGP_AJ_G0014208	pseudogene	Chr9:81234560-81234947 (+)
AKR/J	MGP_AKRJ_G0014133	pseudogene	Chr9:83134258-83134645 (+)
BALB/cJ	MGP_BALBcJ_G0014158	pseudogene	Chr9:80883118-80883505 (+)
C3H/HeJ	MGP_C3HHeJ_G0013989	pseudogene	Chr9:83659288-83659675 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014602	pseudogene	Chr9:86459148-86459535 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012431	pseudogene	Chr9:80157414-80157801 (+)
CAST/EiJ	MGP_CASTEiJ_G0013646	pseudogene	Chr9:84059495-84059882 (+)
CBA/J	MGP_CBAJ_G0013971	pseudogene	Chr9:89541821-89542208 (+)
DBA/2J	MGP_DBA2J_G0014055	pseudogene	Chr9:80827505-80827892 (+)
FVB/NJ	MGP_FVBNJ_G0014054	pseudogene	Chr9:79963184-79963571 (+)
LP/J	MGP_LPJ_G0014138	pseudogene	Chr9:84352004-84352391 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014085	pseudogene	Chr9:90947758-90948145 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014575	pseudogene	Chr9:83312486-83312873 (+)
PWK/PhJ	MGP_PWKPhJ_G0013461	pseudogene	Chr9:80982390-80982777 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013246	pseudogene	Chr9:83467906-83468293 (+)
WSB/EiJ	MGP_WSBEiJ_G0013704	pseudogene	Chr9:83290217-83290604 (+)

Homology

• Gene Tree
  Gm28552
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28552
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099816 (Evidence)
• NCBI Gene
  101696218

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099816	Ensembl Gene Model | MGI Sequence Detail	388	C57BL/6J
transcript	ENSMUST00000190725	Ensembl | MGI Sequence Detail	388	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;