Gm28564 Gene Detail

Summary

• Symbol
  Gm28564
• Name
  predicted gene 28564

• Feature Type
  lncRNA gene
• IDs
  MGI:5579270
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:41996490-42003244 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579270	lncRNA gene	Chr13:41996490-42003244 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003184	antisense lncRNA gene	Chr13:40355236-40363325 (+)
A/J	MGP_AJ_G0003158	antisense lncRNA gene	Chr13:39012403-39019142 (+)
AKR/J	MGP_AKRJ_G0003140	antisense lncRNA gene	Chr13:40080155-40086933 (+)
BALB/cJ	MGP_BALBcJ_G0003146	antisense lncRNA gene	Chr13:39204922-39211794 (+)
C3H/HeJ	MGP_C3HHeJ_G0003102	antisense lncRNA gene	Chr13:39939483-39947371 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003290	antisense lncRNA gene	Chr13:41627904-41635378 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002818	antisense lncRNA gene	Chr13:37139167-37146729 (+)
CAST/EiJ	MGP_CASTEiJ_G0003070	antisense lncRNA gene	Chr13:39748994-39755593 (+)
CBA/J	MGP_CBAJ_G0003098	antisense lncRNA gene	Chr13:43402888-43411207 (+)
DBA/2J	MGP_DBA2J_G0003104	antisense lncRNA gene	Chr13:38575618-38583542 (+)
FVB/NJ	MGP_FVBNJ_G0003123	antisense lncRNA gene	Chr13:38081449-38088213 (+)
LP/J	MGP_LPJ_G0003179	antisense lncRNA gene	Chr13:40610291-40619866 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003112	antisense lncRNA gene	Chr13:43357382-43374237 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003290	antisense lncRNA gene	Chr13:39721228-39727942 (+)
PWK/PhJ	MGP_PWKPhJ_G0003028	antisense lncRNA gene	Chr13:38667289-38674292 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002973	antisense lncRNA gene	Chr13:38369095-38375286 (+)
WSB/EiJ	MGP_WSBEiJ_G0003102	antisense lncRNA gene	Chr13:40029835-40036598 (+)

Homology

• Gene Tree
  Gm28564
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28564
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099672 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099672	Ensembl Gene Model | MGI Sequence Detail	6755	C57BL/6J
transcript	ENSMUST00000190864	Ensembl | MGI Sequence Detail	240	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69