Gm28586 Gene Detail

Summary

• Symbol
  Gm28586
• Name
  predicted gene 28586

• Feature Type
  lncRNA gene
• IDs
  MGI:5579292
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:100412669-100413124 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579292	lncRNA gene	Chr9:100412669-100413124 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037094	sense intronic lncRNA gene	Chr9:101973155-101973605 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0037029	sense intronic lncRNA gene	Chr9:100772382-100772868 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0037585	sense intronic lncRNA gene	Chr9:104890875-104891322 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034629	sense intronic lncRNA gene	Chr9:96015411-96015865 (-)
CAST/EiJ	MGP_CASTEiJ_G0035946	sense intronic lncRNA gene	Chr9:100981528-100981971 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0036957	sense intronic lncRNA gene	Chr9:102199342-102199834 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036867	sense intronic lncRNA gene	Chr9:110396209-110396674 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037703	sense intronic lncRNA gene	Chr9:101022611-101023064 (-)
PWK/PhJ	MGP_PWKPhJ_G0035640	sense intronic lncRNA gene	Chr9:98077388-98077886 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035448	sense intronic lncRNA gene	Chr9:101081971-101082421 (-)
WSB/EiJ	MGP_WSBEiJ_G0036148	sense intronic lncRNA gene	Chr9:100887347-100887767 (-)

Homology

• Gene Tree
  Gm28586
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28586
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000100176 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100176	Ensembl Gene Model | MGI Sequence Detail	456	C57BL/6J
transcript	ENSMUST00000189857	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;