Gm28610 Gene Detail

Summary

• Symbol
  Gm28610
• Name
  predicted gene 28610

• Feature Type
  lncRNA gene
• IDs
  MGI:5579316
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:151751170-151762814 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  427 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579316	lncRNA gene	Chr1:151751170-151762814 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002762	antisense lncRNA gene	Chr1:156628187-156639419 (+)
A/J	MGP_AJ_G0002738	antisense lncRNA gene	Chr1:150306618-150318583 (+)
AKR/J	MGP_AKRJ_G0002719	antisense lncRNA gene	Chr1:154944325-154955274 (+)
BALB/cJ	MGP_BALBcJ_G0002725	antisense lncRNA gene	Chr1:150874394-150886274 (+)
C3H/HeJ	MGP_C3HHeJ_G0002683	antisense lncRNA gene	Chr1:155060171-155071697 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002868	antisense lncRNA gene	Chr1:162048020-162060001 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002415	antisense lncRNA gene	Chr1:142630552-142641477 (+)
CAST/EiJ	MGP_CASTEiJ_G0002656	antisense lncRNA gene	Chr1:154509756-154524419 (+)
CBA/J	MGP_CBAJ_G0002679	antisense lncRNA gene	Chr1:167743179-167755477 (+)
DBA/2J	MGP_DBA2J_G0002685	antisense lncRNA gene	Chr1:149340427-149352011 (+)
FVB/NJ	MGP_FVBNJ_G0002705	antisense lncRNA gene	Chr1:147795092-147806272 (+)
LP/J	MGP_LPJ_G0002763	antisense lncRNA gene	Chr1:157696467-157707413 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002695	antisense lncRNA gene	Chr1:175419239-175431841 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002872	antisense lncRNA gene	Chr1:154704004-154714945 (+)
PWK/PhJ	MGP_PWKPhJ_G0002613	antisense lncRNA gene	Chr1:148313025-148324019 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002564	antisense lncRNA gene	Chr1:153535230-153547045 (+)
WSB/EiJ	MGP_WSBEiJ_G0002685	antisense lncRNA gene	Chr1:154789069-154801540 (+)

Homology

• Gene Tree
  Gm28610
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm28610
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100685 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100685	Ensembl Gene Model | MGI Sequence Detail	11645	C57BL/6J
transcript	ENSMUST00000187716	Ensembl | MGI Sequence Detail	406	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;