Gm28620 Gene Detail

Summary

• Symbol
  Gm28620
• Name
  predicted gene 28620

• Feature Type
  lncRNA gene
• IDs
  MGI:5579326
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:79145902-79146340 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579326	lncRNA gene	Chr9:79145902-79146340 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007464	lincRNA gene	Chr9:79770369-79770807 (+)
A/J	MGP_AJ_G0007459	lincRNA gene	Chr9:77016255-77016693 (+)
AKR/J	MGP_AKRJ_G0007432	lincRNA gene	Chr9:78839258-78839696 (+)
BALB/cJ	MGP_BALBcJ_G0007437	lincRNA gene	Chr9:76657508-76657946 (+)
C3H/HeJ	MGP_C3HHeJ_G0007381	lincRNA gene	Chr9:79341039-79341477 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007609	lincRNA gene	Chr9:81936548-81936986 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006796	lincRNA gene	Chr9:76204221-76204656 (+)
CAST/EiJ	MGP_CASTEiJ_G0007285	lincRNA gene	Chr9:79667462-79667900 (+)
CBA/J	MGP_CBAJ_G0007363	lincRNA gene	Chr9:84838853-84839291 (+)
DBA/2J	MGP_DBA2J_G0007387	lincRNA gene	Chr9:76656681-76657119 (+)
FVB/NJ	MGP_FVBNJ_G0007405	lincRNA gene	Chr9:75881945-75882383 (+)
LP/J	MGP_LPJ_G0007469	lincRNA gene	Chr9:79999125-79999563 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007385	lincRNA gene	Chr9:86053557-86053995 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007612	lincRNA gene	Chr9:79033108-79033546 (+)
PWK/PhJ	MGP_PWKPhJ_G0007225	lincRNA gene	Chr9:76848614-76849052 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007130	lincRNA gene	Chr9:79175797-79176235 (+)
WSB/EiJ	MGP_WSBEiJ_G0007345	lincRNA gene	Chr9:78970796-78971234 (+)

Homology

• Gene Tree
  Gm28620
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28620
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000102020 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102020	Ensembl Gene Model | MGI Sequence Detail	439	C57BL/6J
transcript	ENSMUST00000190463	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;