Gm28638 Gene Detail

Summary

• Symbol
  Gm28638
• Name
  predicted gene 28638

• Feature Type
  lncRNA gene
• IDs
  MGI:5579344
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:65955661-66005594 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  1453 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579344	lncRNA gene	Chr2:65955661-66005594 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005925	lincRNA gene	Chr2:65962975-66020316 (+)
A/J	MGP_AJ_G0005918	lincRNA gene	Chr2:63401854-63451070 (+)
AKR/J	MGP_AKRJ_G0005893	lincRNA gene	Chr2:65122559-65175188 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0005844	lincRNA gene	Chr2:65311862-65362138 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006057	lincRNA gene	Chr2:67903133-67958610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005391	lincRNA gene	Chr2:60747883-60808432 (+)
CAST/EiJ	MGP_CASTEiJ_G0005780	lincRNA gene	Chr2:65355778-65407604 (+)
CBA/J	MGP_CBAJ_G0005829	lincRNA gene	Chr2:70429777-70490801 (+)
DBA/2J	MGP_DBA2J_G0005850	lincRNA gene	Chr2:63034471-63085032 (+)
FVB/NJ	MGP_FVBNJ_G0005876	lincRNA gene	Chr2:62466614-62516071 (+)
LP/J	MGP_LPJ_G0005929	lincRNA gene	Chr2:65792254-65844714 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005863	lincRNA gene	Chr2:72406182-72476186 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006054	lincRNA gene	Chr2:65190601-65243586 (+)
PWK/PhJ	MGP_PWKPhJ_G0005729	lincRNA gene	Chr2:62861373-62913922 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005641	lincRNA gene	Chr2:65344134-65398221 (+)
WSB/EiJ	MGP_WSBEiJ_G0005833	lincRNA gene	Chr2:65557220-65611267 (+)

Homology

• Gene Tree
  Gm28638
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28638
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000100197 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100197	Ensembl Gene Model | MGI Sequence Detail	49934	C57BL/6J
transcript	ENSMUST00000188152	Ensembl | MGI Sequence Detail	288	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;