Gm28651 Gene Detail

Summary

• Symbol
  Gm28651
• Name
  predicted gene 28651

• Feature Type
  lncRNA gene
• IDs
  MGI:5579357
  NCBI Gene: 102640484
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:32407605-32411207 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  268 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579357	lncRNA gene	Chr14:32407590-32411207 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005533	lincRNA gene	Chr14:25951670-25953541 (+)
A/J	MGP_AJ_G0005519	lincRNA gene	Chr14:24955762-24957630 (+)
AKR/J	MGP_AKRJ_G0005498	lincRNA gene	Chr14:26111275-26113143 (+)
BALB/cJ	MGP_BALBcJ_G0005501	lincRNA gene	Chr14:25136605-25138473 (+)
C3H/HeJ	MGP_C3HHeJ_G0005448	lincRNA gene	Chr14:25987348-25989216 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005656	lincRNA gene	Chr14:26971882-26973750 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005027	lincRNA gene	Chr14:25022915-25024763 (+)
CAST/EiJ	MGP_CASTEiJ_G0005390	lincRNA gene	Chr14:25798290-25800160 (+)
CBA/J	MGP_CBAJ_G0005437	lincRNA gene	Chr14:27981775-27983643 (+)
DBA/2J	MGP_DBA2J_G0005453	lincRNA gene	Chr14:24980596-24982464 (+)
FVB/NJ	MGP_FVBNJ_G0005479	lincRNA gene	Chr14:24947520-24949388 (+)
LP/J	MGP_LPJ_G0005537	lincRNA gene	Chr14:26265147-26267018 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005463	lincRNA gene	Chr14:27180094-27181962 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005656	lincRNA gene	Chr14:25903127-25904995 (+)
PWK/PhJ	MGP_PWKPhJ_G0005341	lincRNA gene	Chr14:24470374-24472245 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005259	lincRNA gene	Chr14:25524191-25526041 (+)
WSB/EiJ	MGP_WSBEiJ_G0005440	lincRNA gene	Chr14:25965179-25967045 (+)

Homology

• Gene Tree
  Gm28651
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000101086 (Evidence)
• NCBI Gene
  102640484

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101086	Ensembl Gene Model | MGI Sequence Detail	3603	C57BL/6J
transcript	ENSMUST00000227968	Ensembl | MGI Sequence Detail	2693	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28651:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124992	Chr14:32407646-32407655 (+)	46 bp