Gm28659 Pseudogene Detail

Summary

• Symbol
  Gm28659
• Name
  predicted gene 28659

• Feature Type
  pseudogene
• IDs
  MGI:5579365
  NCBI Gene: 115487491
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:10938912-10939670 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579365	pseudogene	Chr1:10916320-10939673 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009999	pseudogene	Chr1:8180290-8181059 (+)
A/J	MGP_AJ_G0009979	pseudogene	Chr1:8196853-8197622 (+)
AKR/J	MGP_AKRJ_G0009961	pseudogene	Chr1:8090170-8090939 (+)
BALB/cJ	MGP_BALBcJ_G0009967	pseudogene	Chr1:7935074-7935843 (+)
C3H/HeJ	MGP_C3HHeJ_G0009898	pseudogene	Chr1:8018835-8019589 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010217	pseudogene	Chr1:8536564-8537437 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008997	pseudogene	Chr1:6989556-6990414 (+)
CAST/EiJ	MGP_CASTEiJ_G0009749	pseudogene	Chr1:8212718-8213595 (+)
CBA/J	MGP_CBAJ_G0009872	pseudogene	Chr1:8741014-8741768 (+)
DBA/2J	MGP_DBA2J_G0009896	pseudogene	Chr1:7816500-7817258 (+)
FVB/NJ	MGP_FVBNJ_G0009920	pseudogene	Chr1:7702652-7703421 (+)
LP/J	MGP_LPJ_G0009990	pseudogene	Chr1:8385668-8386437 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009880	pseudogene	Chr1:9363496-9364254 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010192	pseudogene	Chr1:8011864-8012633 (+)
PWK/PhJ	MGP_PWKPhJ_G0009653	pseudogene	Chr1:7672219-7673097 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009472	pseudogene	Chr1:8171642-8172519 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm28659
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100648 (Evidence)
• NCBI Gene
  115487491

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100648	Ensembl Gene Model | MGI Sequence Detail	759	C57BL/6J
transcript	ENSMUST00000188013	Ensembl | MGI Sequence Detail	759	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;