Gm28669 Pseudogene Detail

Summary

• Symbol
  Gm28669
• Name
  predicted gene 28669

• Feature Type
  pseudogene
• IDs
  MGI:5579375
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:15830985-15831084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579375	pseudogene	Chr1:15830985-15831084 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010007	pseudogene	Chr1:13231829-13231928 (+)
A/J	MGP_AJ_G0009988	pseudogene	Chr1:13100029-13100128 (+)
AKR/J	MGP_AKRJ_G0009971	pseudogene	Chr1:13100826-13100925 (+)
BALB/cJ	MGP_BALBcJ_G0009977	pseudogene	Chr1:12808705-12808804 (+)
C3H/HeJ	MGP_C3HHeJ_G0009908	pseudogene	Chr1:13102893-13102992 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010226	pseudogene	Chr1:13807226-13807325 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009005	pseudogene	Chr1:11563423-11563522 (+)
CAST/EiJ	MGP_CASTEiJ_G0009757	pseudogene	Chr1:13203026-13203125 (+)
CBA/J	MGP_CBAJ_G0009882	pseudogene	Chr1:14134199-14134298 (+)
DBA/2J	MGP_DBA2J_G0009904	pseudogene	Chr1:12698440-12698539 (+)
FVB/NJ	MGP_FVBNJ_G0009930	pseudogene	Chr1:12504819-12504918 (+)
LP/J	MGP_LPJ_G0009998	pseudogene	Chr1:13433822-13433921 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009890	pseudogene	Chr1:14823090-14823189 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010201	pseudogene	Chr1:13045185-13045284 (+)
PWK/PhJ	MGP_PWKPhJ_G0009661	pseudogene	Chr1:12477286-12477385 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009479	pseudogene	Chr1:13216491-13216588 (+)
WSB/EiJ	MGP_WSBEiJ_G0009818	pseudogene	Chr1:13001475-13001574 (+)

Homology

• Gene Tree
  Gm28669
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100814 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100814	Ensembl Gene Model | MGI Sequence Detail	100	C57BL/6J
transcript	ENSMUST00000188400	Ensembl | MGI Sequence Detail	100	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;