Gm28688 Pseudogene Detail

Summary

• Symbol
  Gm28688
• Name
  predicted gene 28688

• Feature Type
  pseudogene
• IDs
  MGI:5579394
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:96691809-96692076 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579394	pseudogene	Chr9:96691809-96692076 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014227	pseudogene	Chr9:98037401-98037668 (+)
A/J	MGP_AJ_G0014243	pseudogene	Chr9:94598807-94599074 (+)
AKR/J	MGP_AKRJ_G0014169	pseudogene	Chr9:96907523-96907790 (+)
BALB/cJ	MGP_BALBcJ_G0014193	pseudogene	Chr9:94281348-94281615 (+)
C3H/HeJ	MGP_C3HHeJ_G0014025	pseudogene	Chr9:97310721-97310988 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014644	pseudogene	Chr9:100849126-100849393 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012457	pseudogene	Chr9:92433004-92433271 (+)
CAST/EiJ	MGP_CASTEiJ_G0013680	pseudogene	Chr9:97101990-97102258 (+)
CBA/J	MGP_CBAJ_G0014006	pseudogene	Chr9:104343741-104344008 (+)
DBA/2J	MGP_DBA2J_G0014091	pseudogene	Chr9:94121579-94121846 (+)
FVB/NJ	MGP_FVBNJ_G0014088	pseudogene	Chr9:92969392-92969659 (+)
LP/J	MGP_LPJ_G0014177	pseudogene	Chr9:98288042-98288309 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014123	pseudogene	Chr9:106315678-106315945 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014614	pseudogene	Chr9:97148473-97148740 (+)
PWK/PhJ	MGP_PWKPhJ_G0013494	pseudogene	Chr9:94307167-94307434 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013283	pseudogene	Chr9:97202285-97202552 (+)
WSB/EiJ	MGP_WSBEiJ_G0013739	pseudogene	Chr9:97010576-97010843 (+)

Homology

• Gene Tree
  Gm28688
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28688
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100383 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100383	Ensembl Gene Model | MGI Sequence Detail	268	C57BL/6J
transcript	ENSMUST00000187301	Ensembl | MGI Sequence Detail	268	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;